Hello all,
I am trying to perform ANOVA on my sample data given below to see if any
gene(column 1 stands for gene names) is differentially expressed after
subjecting it to the 6 different experiments(columns 2 to 7 are
experiments).
Gene
14A_U133A_Detection
14B_U133A_Signal
88A_U133A_Signal
88B_U133A_Signal
183A_U133A_Signal
183B_U133A_Signal
AFFX-BioB-5_at
403
409.3
611.5
569.2
536.6
580.2
AFFX-BioB-M_at
757.3
574.4
826.7
595.3
755.2
956
AFFX-BioB-3_at
284.4
327.3
421.6
336.6
391.3
412.6
AFFX-BioC-5_at
2314.2
1685.3
2264.7
2204.1
2233.1
2458.4
AFFX-BioC-3_at
1574.5
1273
1484.6
1321.2
1474.7
1774.1
AFFX-BioDn-5_at
2333.7
1796.8
2464.5
2372.5
2095.9
2735.7
AFFX-BioDn-3_at
13673.9
11463.9
13624.7
14513.9
12934.1
16293.1
AFFX-CreX-5_at
17778.8
15248.8
19977.2
19613.4
18609.1
18988.2
AFFX-CreX-3_at
31056.6
24869.9
30773.4
32918.6
34412.1
33954.6
I have to check if each gene is behaving similarly in all its experiments or
if it is showing some variation in a particular experiment. I am new to R
and i am not able to figure out how to do this.
Thanks,
Vasu.
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