To R-helpers, Running R version 2.10.0 (2009-10-26) Linux ... 2.6.25.20-0.5-default #1 SMP 2009-08-14 01:48:11 +0200 x86_64 x86_64 x86_64 GNU/Linux openSUSE 11.0 (X86-64) and having difficulties reading a fifo from within R. A short example that I find simply haning is shown as 'SHORT SCRIPT' below. I expected R to print a data set read from the fifo with the numbers 0,1,...7 and then gracefully exit. Any ideas why not? A longer script that actually does the job in its 2nd clause is shown in 'LONG SCRIPT' below ... I'm confused that the open call is needed. Any comments on this? Regards MJ --- SHORT SCRIPT BEGIN #!/bin/bash mkfifo chops gawk 'BEGIN {for (i=0;i<8;i++){print i}}' > chops & R --slave --no-save <<EOF print ("Hello from R") con.data <- read.table ("chops") con.data EOF unlink chops --- SHORT SCRIPT END --- LONG SCRIPT BEGIN #!/bin/bash DO_1st=no DO_2nd=yes DO_3rd=yes # 1 Hoped for this to work but fails if [[ $DO_1st =~ [yY][eE][sS] ]] ; then echo "With R 1" mkfifo chops gawk 'BEGIN {for (i=0;i<8;i++){print i}}' > chops & R --slave --no-save <<EOF print ("Hello from R 1") con.data <- read.table ("chops") con.data EOF unlink chops fi # 2 Works but with an unexpected open call if [[ $DO_2nd =~ [yY][eE][sS] ]] ; then echo "With R 2" mkfifo chops gawk 'BEGIN {for (i=0;i<8;i++){print i}}' > chops & R --slave --no-save <<EOF print ("Hello from R 2") theFifo <- fifo(description="chops", open="read") open(theFifo) # without this read.table raises error of no lines available con.data <- read.table (theFifo) close(theFifo) con.data EOF unlink chops fi # 3 Works - just for reference if [[ $DO_3rd =~ [yY][eE][sS] ]] ; then echo "With cat" mkfifo chops gawk 'BEGIN {for (i=0;i<8;i++){print i}}' > chops & cat chops unlink chops fi --- LONG SCRIPT END