R help - Jan 2010 - Align two protein sequences using BLAST

Dear R users,
I would like to align two protein sequences using BLAST
(bl2seq). The question is whether this programm have been
implemented in R.
Thank you for your help,
Alla.

You should send this note to the biconductor mailing list rather than the
R-help. As to your question, please look at the Biostrings bioconductor
package.

On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska <
alla.bullashevska@fdm.uni-freiburg.de> wrote:
>
> Dear R users,
> I would like to align two protein sequences using BLAST
> (bl2seq). The question is whether this programm have been
> implemented in R.
> Thank you for your help,
> Alla.
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
	[[alternative HTML version deleted]]

On Jan 5, 2010, at 10:46 AM, Tony Chiang wrote:
> You should send this note to the biconductor mailing list rather  
> than the
> R-help. As to your question, please look at the Biostrings  
> bioconductor
> package.
The BioC webpages give a link to the Gmane archive for searching. A  
search on blast protein sequences produced 15 hits and this one seemed  
to be potentially relevant:

http://article.gmane.org/gmane.science.biology.informatics.conductor/26460/match=blast+protein+sequences

There may be other postings in that group of fifteen with relevant  
material. I just wanted to get you going in the right location, which  
is not this list.

-- 
David
>
> On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska <
> alla.bullashevska at fdm.uni-freiburg.de> wrote:
>
>>
>> Dear R users,
>> I would like to align two protein sequences using BLAST
>> (bl2seq). The question is whether this programm have been
>> implemented in R.
>> Thank you for your help,
>> Alla.
>>
>> ______________________________________________
>
David Winsemius, MD
Heritage Laboratories
West Hartford, CT