Dear all,
I meet error when installing the newest Bioconductor packages 2.0 for R
2.5.1.
the enviroments are as bellow:
> sessionInfo()
R version 2.5.1 (2007-06-27)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "stats" "graphics" "grDevices"
"utils" "datasets" "methods"
[7] "base"
>
The error messages are partly as:
.....
boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
boost::default_color_type, boost::no_property>, size_t>&)'
make: *** [interfaces.o] Error 1
chmod: failed to get attributes of
`/usr/local/lib/R/library/RBGL/libs/*': No such file or directory
ERROR: compilation failed for package 'RBGL'
but, there exists such directory "
/usr/local/lib/R/library/RBGL/libs/"
in my computer:
[root at yxnlinux getBioC2.5-R2.5.1]# ls -al
/usr/local/lib/R/library/RBGL/libs/
total 17364
drwxr-xr-x 2 root root 4096 Dec 23 2005 .
drwxr-xr-x 17 root root 4096 Dec 23 2005 ..
-rwxr-xr-x 1 root root 17743886 Dec 23 2005 RBGL.so
Please help me to fix it.
THanks,
xinan
