similar to: install error for RBGL_1.12.0 on linux

Hi, Li, Thanks for reply. It is strange that I used RBGL_1.6.0 successfully on the same linux system with R 2.3.1 before! After trying to install R 2.5.1, the RBGL_1.12.0 failed to be installed. Then, I uninstalled R. Delete the directory R/lib/. Installed R.2.3.1 again. And run getBioC1.8.5 for R 2.3.1 to download the three packages graph_1.10.6, RBGL_1.12.0 and Ruuid_1.10.0. But still

Hi, Li and all lists, More, I have searched the web, and found one solution as described in: https://stat.ethz.ch/pipermail/bioc-devel/2007-June/001168.html But, My condition is some how different: 1) my g++ version is: g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS =

Hi all, When installing ggplot2 on with install.packages("ggplot2", dep = T), the colorspace dependency doesn't get installed (see below for transcript from R session). The relevant lines from my description file are: Depends: R (>= 2.4), grid, reshape (>= 0.8.0), proto, splines, MASS, RColorBrewer, colorspace Suggests: quantreg, Hmisc, mapproj, maps Have I done something

Some time ago I had difficulty installing RBGL with Ubuntu Hardy on R-2.7.0 and the problem was attributed to an with BGL. I got some very helpful advice and posted a script to fix the problem by hacking the RGBL source code: dateTue, Jan 15, 2008 at 2:16 PMsubjectRe: [R-sig-Debian] trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64mailing

Hi I've been trying to install RBGL and several other packages in gR task view on Fedora11 64 bit without success My guess is that it is due to boost (fedora is at boost 1.37 which is a few minor versions behind 1.40) and very recent g++ Has anyone managed to install the gR task view or RBGL in particular? Thanks Cheers Peter ======== [root at SPH-PH-428-04P ~]# gcc --version gcc (GCC)

Full_Name: Christian Kuehnert Version: 2.7.1 OS: Windows XP Submission from: (NULL) (91.14.237.109) Hello, I've installed the package RBGL (and XML and Rgraphviz) and tried to follow the examples in the RBGL-manual http://bioconductor.org/packages/2.2/bioc/vignettes/RBGL/inst/doc/RBGL.pdf But when I try to plot the graph using e.g. plot(dijk) an error message occurs: "Error in

Hi all, I was installing a package *RBGL* of bioconductor. However, I had some issues while installing it. I asked the devel group of bioconductor and they told me to consult this group. Here is my conversation with the bioconductor group related to the problem *Me->* I was trying to install the RBGL package using the following command biocLite("RBGL") However, I got the

I've just installed Debian Lenny and RBGL fails compilation with the following errors (sessionInfo() follows). * Installing *source* package 'RBGL' ... untarring boost include tree... ** libs g++ -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -c bbc.cpp -o bbc.o In file included from /usr/include/c++/4.3/ext/hash_set:64,

Hi all, I was installing a package *RBGL* of bioconductor. However, I had some issues while installing it. I asked the devel group of bioconductor and they told me to consult this group. Here is my conversation with the bioconductor group related to the problem *Me->* I was trying to install the RBGL package using the following command biocLite("RBGL") However, I got the

The Bioconductor core group would like to announce the 1.3 release of the Bioconductor software. There are many new packages as well as several major upgrades and fixes in older packages, and users are encouraged to check them out. Release 1.3 is intended to be operated with R version 1.8.X, which can be obtained at CRAN (http://cran.r-project.org/) -- WHAT FEATURES DOES THIS RELEASE PROVIDE?

The Bioconductor core group would like to announce the 1.3 release of the Bioconductor software. There are many new packages as well as several major upgrades and fixes in older packages, and users are encouraged to check them out. Release 1.3 is intended to be operated with R version 1.8.X, which can be obtained at CRAN (http://cran.r-project.org/) -- WHAT FEATURES DOES THIS RELEASE PROVIDE?

Dear all, I am trying to run the function "lambdaSets" using the package "RBGL". This package uses another package "graph" which has been removed from the CRAN repository, but is available at the archive (http://cran.r-project.org/src/contrib/Archive/graph/). I installed the package from the R menu at "install packages from local zip files" (after

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes

I am unable to load a just saved R object. Get message "ReadItem: unknown type 65" I am using R-devel and the problem is reproducible after logout and restarting R. Output and sessionInfo() below. Mark > setwd("~/Genomics/Experiments.Genomic/BB01/acb.shell") > local(save(affy.object.preprocessed, file ="affy.object.preprocessed.R" )) >

Hi I'm trying to install the RBGL package. However I am getting the following error; can anybody shed some light on what I'm missing? /usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared Thanks. Iain > sessionInfo() R version 2.7.2 (2008-08-25) i486-pc-linux-gnu locale:

The minCut function in RBGL package returns only a value or the minimum cut. I would be really greatful if any knows of any R function or package available for finding all minimal cut sets ( i.e., components whose failure will results in a network failure) between any given pair of vertices.

Dear R users, I'm using graph library to create a mesh-like network topology and implement a load balance routing algorithm. The current implementation uses graph, RBGL, and Rgraphviz libraries. I have a few attributes on every edge to represent the network loading and capacity, and I frequently update these values. However, I found it works so slow and right now I'm consider rewriting it

I have developed a problem with the postscript output of plot on Windows. My code still works properly with R 2.3 but, with R 2.4, the white text on red background does not show up. It does, however, show up when output is sent to the screen. Below is my code and sessionInfo. R version 2.4.0 Under development (unstable) (2006-08-29 r39012) i386-pc-mingw32 locale: LC_COLLATE=English_United

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and