search for: rbgl

Hi I've been trying to install RBGL and several other packages in gR task view on Fedora11 64 bit without success My guess is that it is due to boost (fedora is at boost 1.37 which is a few minor versions behind 1.40) and very recent g++ Has anyone managed to install the gR task view or RBGL in particular? Thanks Cheers Peter =...

Dear all, I am trying to run the function "lambdaSets" using the package "RBGL". This package uses another package "graph" which has been removed from the CRAN repository, but is available at the archive (http://cran.r-project.org/src/contrib/Archive/graph/). I installed the package from the R menu at "install packages from local zip files" (after do...

I've just installed Debian Lenny and RBGL fails compilation with the following errors (sessionInfo() follows). * Installing *source* package 'RBGL' ... untarring boost include tree... ** libs g++ -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -c bbc.cpp -o bbc.o In file i...

Some time ago I had difficulty installing RBGL with Ubuntu Hardy on R-2.7.0 and the problem was attributed to an with BGL. I got some very helpful advice and posted a script to fix the problem by hacking the RGBL source code: dateTue, Jan 15, 2008 at 2:16 PMsubjectRe: [R-sig-Debian] trouble installing building packages from source using R 2.6.0...

Full_Name: Christian Kuehnert Version: 2.7.1 OS: Windows XP Submission from: (NULL) (91.14.237.109) Hello, I've installed the package RBGL (and XML and Rgraphviz) and tried to follow the examples in the RBGL-manual http://bioconductor.org/packages/2.2/bioc/vignettes/RBGL/inst/doc/RBGL.pdf But when I try to plot the graph using e.g. plot(dijk) an error message occurs: "Error in as.double(y): cannot coerce type 'S4'...

Hi all, I was installing a package *RBGL* of bioconductor. However, I had some issues while installing it. I asked the devel group of bioconductor and they told me to consult this group. Here is my conversation with the bioconductor group related to the problem *Me->* I was trying to install the RBGL package using the following comma...

Hi all, I was installing a package *RBGL* of bioconductor. However, I had some issues while installing it. I asked the devel group of bioconductor and they told me to consult this group. Here is my conversation with the bioconductor group related to the problem *Me->* I was trying to install the RBGL package using the following comma...

Hi I'm trying to install the RBGL package. However I am getting the following error; can anybody shed some light on what I'm missing? /usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared Thanks. Iain > sessionInfo() R version 2.7.2 (2008-08-25) i486-pc-lin...

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes what can...

...; > The error messages are partly as: ..... boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, size_t>&)' make: *** [interfaces.o] Error 1 chmod: failed to get attributes of `/usr/local/lib/R/library/RBGL/libs/*': No such file or directory ERROR: compilation failed for package 'RBGL' but, there exists such directory " /usr/local/lib/R/library/RBGL/libs/" in my computer: [root at yxnlinux getBioC2.5-R2.5.1]# ls -al /usr/local/lib/R/library/RBGL/libs/ total 17364 drwxr-xr-x...

Hello R Help Team, I have created graph from weighted adjecency matrix .Is there a way I can find highly connected nodes in Igraph like the Package RBGL does. nathan -- View this message in context: http://www.nabble.com/Highly-Connected-Nodes-in-Igraph-tp22377522p22377522.html Sent from the R help mailing list archive at Nabble.com.

Hi, Li, Thanks for reply. It is strange that I used RBGL_1.6.0 successfully on the same linux system with R 2.3.1 before! After trying to install R 2.5.1, the RBGL_1.12.0 failed to be installed. Then, I uninstalled R. Delete the directory R/lib/. Installed R.2.3.1 again. And run getBioC1.8.5 for R 2.3.1 to download the three packages graph_1.10.6,...

Hello, I'm running an algorithm for graph structural cohesion that requires a depth-first search of subgraphs of a rather large network. The algorithm will necessarily be redundant in the subgraphs it recurses to, so to speed up the process I implemented a check at each subgraph to see if it's been searched already. This algorithm is very slow, and takes days to complete on a

...rning grumbles: Warning messages: 1: packages 'dynamicGraph', 'ggplot', 'grid', 'Qtoolbox', 'ref', 'splines', 'stats4', 'tapiR', 'tcltk', 'tools' are not available 2: dependencies 'Design', 'graph', 'RBGL' are not available Sure enough, those in warning 1 were all in the 2.4.1 library directory tree and those in warning 2 weren't. Now I'm trying to work out how these failures have happened. I think some of this could be because of a problem with the mirrors (though I've tried both...

The minCut function in RBGL package returns only a value or the minimum cut. I would be really greatful if any knows of any R function or package available for finding all minimal cut sets ( i.e., components whose failure will results in a network failure) between any given pair of vertices.

Dear R users, I'm using graph library to create a mesh-like network topology and implement a load balance routing algorithm. The current implementation uses graph, RBGL, and Rgraphviz libraries. I have a few attributes on every edge to represent the network loading and capacity, and I frequently update these values. However, I found it works so slow and right now I'm consider rewriting it using C or Python. Then I found another library, which is "igraph&...

...eplotter XML GOstats Category hgu95av2 KEGG multtest xtable "1.11.9" "1.11.8" "0.99-8" "1.6.0" "1.4.1" "1.12.0" "1.8.1" "1.11.2" "1.3-2" RBGL annotate GO graph Ruuid limma genefilter survival rat2302 "1.8.1" "1.11.5" "1.6.5" "1.11.13" "1.11.2" "2.7.9" "1.11.8" "2.28" "1.12.0"...

...pproach, Iteratively ReWeighted Partial Least Squares (IRWPLS) by Marx (1996). Both two-group and multi-group classifications are incorporated. Firth's bias reduction procedure is also incorporated to ensure more stable and finite regression coefficients. --- graph, Rgraphviz, and RBGL: Graph/Network handling is greatly improved. There is tighter integration between graph, RBGL and Rgraphviz. Colors and SubGraph layouts are now supported in Rgraphviz. RBGL support includes minimal spanning trees, both strong and weakly connected components, and Dijkstra's shor...

...pproach, Iteratively ReWeighted Partial Least Squares (IRWPLS) by Marx (1996). Both two-group and multi-group classifications are incorporated. Firth's bias reduction procedure is also incorporated to ensure more stable and finite regression coefficients. --- graph, Rgraphviz, and RBGL: Graph/Network handling is greatly improved. There is tighter integration between graph, RBGL and Rgraphviz. Colors and SubGraph layouts are now supported in Rgraphviz. RBGL support includes minimal spanning trees, both strong and weakly connected components, and Dijkstra's shor...

..."1.9.21" "0.8-0" "1.6-0" GOstats Category Matrix lattice genefilter "2.1.13" "2.1.20" "0.9975-11" "0.14-16" "1.13.8" survival KEGG RBGL annotate GO "2.31" "1.15.12" "1.11.4" "1.13.6" "1.15.12" graph limma affy affyio Biobase "1.13.6" "2.9.13" "1.13.14"...