I am having trouble getting an install of RCurl to work properly on a
Unix server. The steps I have taken are:
1. installed cUrl from source without difficulty
2. installed RCurl from source using the command
~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library
~/RCurl_0.8-0.tar.gz I received no errors during this install
3. when I go back to R and require(RCurl), I get
> require(RCurl)
Loading required package: RCurl
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/N/u/mkimpel/BigRed/R_HOME/R-devel/library/RCurl/libs/RCurl.so':
libcurl.so.4: cannot open shared object file: No such file or directory
?1? FALSE
Outside of R I get
mkimpel?BigRed:?/R_HOME/R-devel/library/RCurl/libs> ls
RCurl.so
I can cat into RCurl and I have even done chmod a+x RCurl.so in case
there was a problem with permission for R to open the file.
Below is my sessionInfo. Thanks, Mark
> sessionInfo()
R version 2.5.0 Under development (unstable) (2007-03-11 r40824)
powerpc64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
?1? "stats" "graphics" "grDevices"
"datasets" "utils" "tools"
?7? "methods" "base"
other attached packages:
limma affy affyio Biobase
"2.9.13" "1.13.14" "1.3.3" "1.13.39"
>
--
Mark W. Kimpel MD
Neuroinformatics
Department of Psychiatry
Indiana University School of Medicine
I get the same problem, and haven't figured it out yet. Is it a 32bit/64bit clash? (Similarly, I don't have RMySQL up and running cleanly.)> library(RCurl)Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/share/apps/R/R-2.4.1/library/RCurl/libs/RCurl.so': libcurl.so.4: cannot open shared object file: No such file or directory Error: package/namespace load failed for 'RCurl'> sessionInfo()R version 2.4.1 (2006-12-18) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=en_US.iso885915;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C attached base packages: [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" [7] "base" other attached packages: DBI "0.1-12">Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada -----Original Message----- From: r-help-bounces at stat.math.ethz.ch on behalf of Mark W Kimpel Sent: Wed 3/21/2007 3:09 PM To: r-help at stat.math.ethz.ch Subject: [R] problem with RCurl install on Unix I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get > require(RCurl) Loading required package: RCurl Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/N/u/mkimpel/BigRed/R_HOME/R-devel/library/RCurl/libs/RCurl.so': libcurl.so.4: cannot open shared object file: No such file or directory ?1? FALSE Outside of R I get mkimpel?BigRed:?/R_HOME/R-devel/library/RCurl/libs> ls RCurl.so I can cat into RCurl and I have even done chmod a+x RCurl.so in case there was a problem with permission for R to open the file. Below is my sessionInfo. Thanks, Mark > sessionInfo() R version 2.5.0 Under development (unstable) (2007-03-11 r40824) powerpc64-unknown-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: ?1? "stats" "graphics" "grDevices" "datasets" "utils" "tools" ?7? "methods" "base" other attached packages: limma affy affyio Biobase "2.9.13" "1.13.14" "1.3.3" "1.13.39" > -- Mark W. Kimpel MD Neuroinformatics Department of Psychiatry Indiana University School of Medicine ______________________________________________ R-help at stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
What is 'Unix' here? It seems you mean ppc64 Linux (which is not Unix). On Wed, 21 Mar 2007, Mark W Kimpel wrote:> I am having trouble getting an install of RCurl to work properly on a > Unix server. The steps I have taken are: > > 1. installed cUrl from source without difficulty > 2. installed RCurl from source using the command > ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library > ~/RCurl_0.8-0.tar.gz I received no errors during this install > 3. when I go back to R and require(RCurl), I get > > > require(RCurl) > Loading required package: RCurl > Error in dyn.load(x, as.logical(local), as.logical(now)) : > unable to load shared library > '/N/u/mkimpel/BigRed/R_HOME/R-devel/library/RCurl/libs/RCurl.so': > libcurl.so.4: cannot open shared object file: No such file or directory > ?1? FALSE > > Outside of R I get > > mkimpel?BigRed:?/R_HOME/R-devel/library/RCurl/libs> ls > RCurl.so > > I can cat into RCurl and I have even done chmod a+x RCurl.so in case > there was a problem with permission for R to open the file.Please do read the message it gave, which is not about opening RCurl.so. It is saying that libcurl.so.4 is not found by the run-time linker. Probably you installed it into a directory that is not cached by ldconfig, so where did you install it? (One possible issue is lib64 vs lib.)> Below is my sessionInfo. Thanks, Mark > > > sessionInfo() > R version 2.5.0 Under development (unstable) (2007-03-11 r40824) > powerpc64-unknown-linux-gnu > > locale: > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > ?1? "stats" "graphics" "grDevices" "datasets" "utils" "tools" > ?7? "methods" "base" > > other attached packages: > limma affy affyio Biobase > "2.9.13" "1.13.14" "1.3.3" "1.13.39" > > > > > >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
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