Mark W Kimpel
2007-Mar-23 02:40 UTC
[Rd] can't load just saved R object "ReadItem: unknown type 65"
I have run into a problem loading a just saved R object using R-devel. I
have been saving and loading this particular type of R object for a long
while and never ran into this problem. I save, then immediately reload
(to test save) and get "ReadItem: unnknown type 65".
This error is reproducible after logout from server and restart of emacs
and R.
Below is my output and sessionInfo().
Thanks,
Mark
> setwd("~/Genomics/Experiments.Genomic/BB01/acb.shell")
> local(save(affy.object.preprocessed, file
="affy.object.preprocessed.R" ))
> load("affy.object.preprocessed.R")
Error in load("affy.object.preprocessed.R") :
ReadItem: unknown type 65, perhaps written by later version of R
> sessionInfo()
R version 2.5.0 Under development (unstable) (2007-03-11 r40824)
powerpc64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "splines" "stats" "graphics"
"grDevices" "datasets" "utils"
[7] "tools" "methods" "base"
other attached packages:
multtest rat2302cdf affycoretools annaffy xtable
"1.13.1" "1.15.0" "1.7.8"
"1.7.3" "1.4-3"
gcrma matchprobes biomaRt RCurl XML
"2.7.3" "1.7.4" "1.9.21"
"0.8-0" "1.6-0"
GOstats Category Matrix lattice genefilter
"2.1.13" "2.1.20" "0.9975-11"
"0.14-16" "1.13.8"
survival KEGG RBGL annotate GO
"2.31" "1.15.12" "1.11.4"
"1.13.6" "1.15.12"
graph limma affy affyio Biobase
"1.13.6" "2.9.13" "1.13.14"
"1.3.3" "1.13.39"
--
Mark W. Kimpel MD
Neuroinformatics
Department of Psychiatry
Indiana University School of Medicine
Luke Tierney
2007-Mar-23 12:56 UTC
[Rd] [R] can't load just saved R object "ReadItem: unknown type 65"
According to the logs nothing at all has changed in the serialization code in a month and nothing of consequence for much longer than that. To track this down we will need a complete, reproducible, and preferably minimal example. Best, luke On Thu, 22 Mar 2007, Mark W Kimpel wrote:> I have run into a problem loading a just saved R object using R-devel. I > have been saving and loading this particular type of R object for a long > while and never ran into this problem. I save, then immediately reload > (to test save) and get "ReadItem: unnknown type 65". > > This error is reproducible after logout from server and restart of emacs > and R. > > Below is my output and sessionInfo(). > > Thanks, > Mark > > > setwd("~/Genomics/Experiments.Genomic/BB01/acb.shell") > > local(save(affy.object.preprocessed, file > ="affy.object.preprocessed.R" )) > > load("affy.object.preprocessed.R") > Error in load("affy.object.preprocessed.R") : > ReadItem: unknown type 65, perhaps written by later version of R > > sessionInfo() > R version 2.5.0 Under development (unstable) (2007-03-11 r40824) > powerpc64-unknown-linux-gnu > > locale: > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > [1] "splines" "stats" "graphics" "grDevices" "datasets" "utils" > [7] "tools" "methods" "base" > > other attached packages: > multtest rat2302cdf affycoretools annaffy xtable > "1.13.1" "1.15.0" "1.7.8" "1.7.3" "1.4-3" > gcrma matchprobes biomaRt RCurl XML > "2.7.3" "1.7.4" "1.9.21" "0.8-0" "1.6-0" > GOstats Category Matrix lattice genefilter > "2.1.13" "2.1.20" "0.9975-11" "0.14-16" "1.13.8" > survival KEGG RBGL annotate GO > "2.31" "1.15.12" "1.11.4" "1.13.6" "1.15.12" > graph limma affy affyio Biobase > "1.13.6" "2.9.13" "1.13.14" "1.3.3" "1.13.39" >-- Luke Tierney Chair, Statistics and Actuarial Science Ralph E. Wareham Professor of Mathematical Sciences University of Iowa Phone: 319-335-3386 Department of Statistics and Fax: 319-335-3017 Actuarial Science 241 Schaeffer Hall email: luke at stat.uiowa.edu Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu
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