search for: kimpel

...ch file or directory ** (R:25146): CRITICAL **: Error on loading plugin library plugins/GraphLayout/plugin.la: libgvc.so.3: cannot open shared object file: No such file or directory ** (R:25146): CRITICAL **: can't locate required plugin routine addToToolsMenu in GraphLayout > -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please) ****************************************************************** [[alternat...

...on) { results[[i]]<-do.something.function() if (logical.test(i)) {save(results, "results.tmp")} } logical.test would test to see if i/1000 has no remainder. What R function would test that? Is there an even better way to address my need? Thanks, Mark -- --- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please)

...C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] RWeka_0.3-20 tm_0.4 loaded via a namespace (and not attached): [1] grid_2.10.0 rJava_0.6-3 slam_0.1-3 ------------------------------------------------------------ Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail "The real problem is not whether machines think but whether men do." -- B. F. Skinner ************************...

...the sense that I can spin it on its axes to better visualize some PCA results I have. What are the options in R? I've looked at RGL and perhaps it will suffice but it wasn't apparent from the documentation I found. Any demo scripts available for a package that will work? Mark -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please) ****************************************************************** [[alternat...

...How can I do this? Thanks, Mark > gene.pair.tf.lst [[1]] [[1]]$gene.pair [1] "Lgals1:Pxmp2" [[1]]$sig.cor [1] FALSE [[2]] [[2]]$gene.pair [1] "Lgals1:Pxmp2" [[2]]$sig.cor [1] TRUE [[3]] [[3]]$gene.pair [1] "Lgals1:Pxmp2" [[3]]$sig.cor [1] FALSE -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 204-4202 Home (no voice mail please) mwkimpel<at>gmail<dot>com

...#39;m making some plots on the same page and would like to include an overall title instead of individual main titles as they are similar and their x and y axis labels are sufficient to distinguish them. Is there a way to assign an overall "main" to this page of plots? Mark -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please) ****************************************************************** [[alternat...

...y investigation of the problem (most likely on my end) I'd like to list the variables contained in an environment. If you have an environment loaded, lets call it "pkgEnv', how does one find what it does contain? Mark ------------------------------------------------------------ Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Home Skype: mkimpel "The real problem is not whether machines think but whether men do." -- B...

...new.vec<-c(new.vec,newString) newString <- "" } else { newString<-paste(newString, substr(string, i, i), sep="") } } new.vec<-c(new.vec,newString) } new.vec } ------------------------------------------------------------ Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Home Skype: mkimpel ****************************************************************** [[alternative HTML...

...quot; in the subject header of THIS message. Would the moderators of the lists please check and see if I am doing some wrong and, if not, inform Mr. Connolly that I am not. If others have received this message in error, it is possible it is spam and users should be alerted. Thanks, Mark Mark W. Kimpel MD Official Business Address: Department of Psychiatry Indiana University School of Medicine PR M116 Institute of Psychiatric Research 791 Union Drive Indianapolis, IN 46202 This is a request to anyone who starts a new subject to begin with a new message and NOT reply to an exis...

...name attributes from the row and colnames of the inputted adjacency matrix to graph.adjacency? This would seem like an intuitive feature, but I can't find it documented. In the absence of this feature, how can I make sure that I am setting the vertex name attributes correctly? -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 204-4202 Home (no voice mail please) mwkimpel<at>gmail<dot>com

...tached): [1] affyio_1.12.0 annotate_1.22.0 genefilter_1.24.2 [4] GSEABase_1.6.1 preprocessCore_1.6.0 RBGL_1.20.0 [7] splines_2.9.1 survival_2.35-4 tools_2.9.1 [10] XML_2.5-3 xtable_1.5-5 ------------------------------------------------------------ Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail "The real problem is not whether machines think but whether men do." -- B. F. Skinner

...I am able to vectorize the lm command, but when I try to use anova on the resultant model object I get just one anova result. Is what I want to do possible? And, yes, I am quite conversant with Limma and other BioC packages, I have my reasons for wanting to use lm and anova. Thanks, Mark Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Skype No Voicemail please [[alternative HTML version deleted]]

...r much Googling and futzing, I can't figure out how to do this. The way to do this within Excel is alt-Enter and I've tried '/n', '/n/r', '/r/n' per some web suggestions without luck. Anybody know what character or ASCII code to use for this? Thanks, Mark Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Skype No Voicemail please [[alternative HTML version deleted]]

...LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] car_1.2-15 loaded via a namespace (and not attached): [1] tools_2.10.0 Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Skype No Voicemail please [[alternative HTML version deleted]]

...can provide, but before deluging the list with unnecessary output, I thought I would ask first what would be helpfu. Mark #Make R cd ~/R_HOME wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz tar -xzf R-devel.tar.gz cd ~/R_HOME/R-devel mkdir R-build cd R-build ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build make all make install #####################################33 # console output mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R R version 2.10.0 Under development (unstable) (2009-09-15 r49711) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R...

...p&z=y> , he recommends first learning C++ and then then C if necessary, but as a developer of C++, he is probably biased. I would greatly appreciate the advice of the R developers and package contributors on this subject. "C" or "C++"? Thanks, Mark Mark W. Kimpel MD Official Business Address: Department of Psychiatry Indiana University School of Medicine PR M116 Institute of Psychiatric Research 791 Union Drive Indianapolis, IN 46202 Preferred Mailing Address: 15032 Hunter Court Westfield, IN 46074 (317) 490-5129 Work, & M...

...ckage maintainer about this and he feels there is probably a bug somewhere but he doesn't know where. rgl works for him on Windows, Mac, and Fedora. What is the experience of any Ubuntu or Debian users with rgl? Any ideas of what my problem is or where I should start looking? Mark -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please)

...s I could just paste a character to all of the times, but I'm curious as to the right way to do this. What would be the correct syntax or transformation? Would Time <- factor(as.character(Time)) do it? I want to make sure that it does not get coerced back to numeric. Thanks, Mark Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 399-1219 Skype No Voicemail please [[alternative HTML version deleted]]

..., package "Category" may be out of date 2: In .updateMethodsInTable(fdef, where, attach) : Methods list for generic "conditional" not found > require(RSPython) Loading required package: RSPython Error in dyn.load(file, ...) : unable to load shared library '/home/mkimpel/R_HOME/site-library/RSPython/libs/RSPython.so': /home/mkimpel/R_HOME/site-library/RSPython/libs/RSPython.so: undefined symbol: Rf_initEmbeddedR > sessionInfo() R version 2.6.0 Under development (unstable) (2007-08-01 r42387) i686-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;L...

...; "datasets" "utils" "tools" "methods" "base" other attached packages: DBI limma affy affyio Biobase "0.1-12" "2.9.8" "1.13.14" "1.3.3" "1.13.34" > Mark W. Kimpel MD (317) 490-5129 Work, & Mobile (317) 663-0513 Home (no voice mail please) 1-(317)-536-2730 FAX -----Original Message----- From: Steffen Durinck [mailto:durincks at mail.nih.gov] Sent: Friday, January 26, 2007 9:24 AM To: Kimpel, Mark William Cc: bioconductor at stat.math.ethz.ch...