Hi, Could you help me to install the rgl package on Solaris 10 x86? I tried and got the following error messages. When I compiled my R as 64bit, I used the SUN ProW compilers. However, gcc seems to being used below as well as missing some information. Thank you in advance, Dongseok> install.packages("rgl")--- Please select a CRAN mirror for use in this session --- * Installing *source* package 'rgl' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for X... libraries /usr/openwin/lib, headers /usr/openwin/include checking for libpng-config... yes configure: creating ./config.status config.status: creating src/Makevars ** libs CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c api.cpp -o api.o CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c Background.cpp -o Background.o CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise "Background.cpp", line 54: Warning: boundingBox hides Shape::boundingBox. 1 Warning(s) detected. CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c BBoxDeco.cpp -o BBoxDeco.o CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c Color.cpp -o Color.oCC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise "Color.cpp", line 142: Error: The function "realloc" must have a prototype. "Color.cpp", line 159: Error: The function "realloc" must have a prototype. "Color.cpp", line 160: Error: The function "memcpy" must have a prototype. "Color.cpp", line 168: Error: The function "free" must have a prototype. "Color.cpp", line 175: Error: The function "realloc" must have a prototype. "Color.cpp", line 196: Error: The function "realloc" must have a prototype. "Color.cpp", line 247: Error: The function "realloc" must have a prototype. 7 Error(s) detected. *** Error code 7 make: Fatal error: Command failed for target `Color.o' ERROR: compilation failed for package 'rgl' ** Removing '/export/home/choid/bin/R2.2.1/lib/R/library/rgl' The downloaded packages are in /tmp/Rtmp9Yaawc/downloaded_packages> >[[alternative HTML version deleted]]
On 2/3/2006 6:37 PM, Dongseok Choi wrote:> Hi, > > Could you help me to install the rgl package on Solaris 10 x86?No, but there have been a lot of changes to it since the last upload to CRAN. You might want to grab a new copy from http://rgl.neoscientists.org/About.html by getting the latest Subversion checkout. Duncan Murdoch> I tried and got the following error messages. > When I compiled my R as 64bit, I used the SUN ProW compilers. > However, gcc seems to being used below as well as missing some information. > > Thank you in advance, > Dongseok > >> install.packages("rgl") > --- Please select a CRAN mirror for use in this session --- > * Installing *source* package 'rgl' ... > checking for gcc... gcc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ANSI C... none needed > checking how to run the C preprocessor... gcc -E > checking for X... libraries /usr/openwin/lib, headers /usr/openwin/include > > checking for libpng-config... yes > configure: creating ./config.status > config.status: creating src/Makevars > ** libs > CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c api.cpp -o api.o > CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise > CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c Background.cpp -o Background.o > CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise > "Background.cpp", line 54: Warning: boundingBox hides Shape::boundingBox. > 1 Warning(s) detected. > CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c BBoxDeco.cpp -o BBoxDeco.o > CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise > CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include -I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12 -I/mounts/devel/SUNWspro/prd/include -I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign -I/mounts/devel/SUNWspro/prod/include -c Color.cpp -o Color.oCC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise > "Color.cpp", line 142: Error: The function "realloc" must have a prototype. > "Color.cpp", line 159: Error: The function "realloc" must have a prototype. > "Color.cpp", line 160: Error: The function "memcpy" must have a prototype. > "Color.cpp", line 168: Error: The function "free" must have a prototype. > "Color.cpp", line 175: Error: The function "realloc" must have a prototype. > "Color.cpp", line 196: Error: The function "realloc" must have a prototype. > "Color.cpp", line 247: Error: The function "realloc" must have a prototype. > 7 Error(s) detected. > *** Error code 7 > make: Fatal error: Command failed for target `Color.o' > ERROR: compilation failed for package 'rgl' > ** Removing '/export/home/choid/bin/R2.2.1/lib/R/library/rgl' > > The downloaded packages are in > /tmp/Rtmp9Yaawc/downloaded_packages > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Hi,
Thank you very much for your prompt help.
1)
I downloaded 'rgl' package from CRAN and its version is 0.65.
This seems to be the lasted.
2)
I added those two lines and now Color.cpp is compiled OK.
However, I have a different error as following:
CC -xtarget=generic64 -I/export/home/choid/bin/R2.2.1/lib/R/include
-I/usr/openwin/include -DHAVE_PNG_H -I/usr/include/libpng12
-I/mounts/devel/SUNWspro/prd/include
-I/mounts/devel/GNU/repoz/readline43/include -KPIC -O -xlibmil -dalign
-I/mounts/devel/SUNWspro/prod/include -c devicemanager.cpp -o devicemanager.o
CC: Warning: Option -dalign passed to ld, if ld is invoked, ignored otherwise
"devicemanager.cpp", line 19: Error: Could not find a match for
std::vector<Device*>::vector(std::list<Device*>::iterator,
std::list<Device*>::iterator) needed in DeviceManager::~DeviceManager().
1 Error(s) detected.
*** Error code 1
make: Fatal error: Command failed for target `devicemanager.o'
ERROR: compilation failed for package 'rgl'
3) I am using,
choi2100{choid}202: CC -V
CC: Sun C++ 5.7 Patch 117831-02 2005/03/30
4) Yes, -xlibmil and -dalign were used when I compiled the R with --with-lapack.
I think that I just followed the section for Sun Solaris for Sparc in
"R-install" although I have Sparc x86.
I saw that they are automatically added whenever I install any add-on packages.
I'll try without them.
Thank you very much again,
Dongseok
>>> "Prof Brian Ripley" <ripley@stats.ox.ac.uk>
02/04/06 12:20 AM >>>
On Fri, 3 Feb 2006, Duncan Murdoch wrote:
> On 2/3/2006 6:37 PM, Dongseok Choi wrote:
>> Hi,
>>
>> Could you help me to install the rgl package on Solaris 10 x86?
>
> No, but there have been a lot of changes to it since the last upload to
> CRAN. You might want to grab a new copy from
> http://rgl.neoscientists.org/About.html by getting the latest Subversion
> checkout.
I tried to reproduce this, but our Solaris box does not have GL installed.
My understanding is that the real problem seems to be that Color.cpp is
using undeclared ISO C functions and needs to include
#include <stdlib.h> // for realoc and free
#include <string.h> // for memcpy
so please try adding them.
As for the -dalign messages, I presume you included them (like -xlibmil)
in CXXFLAGS. They are supported by our SunPro compiler, so which version
is yours? (In any case, you need to remove it, if I guessed right.)
[[alternative HTML version deleted]]