Dongseok Choi
2006-Jul-19 20:53 UTC
[R] error when compiling "stats" library in R-2.3.1 on Solaris x86
Hello, I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. Could you tell me how to fix this problem? f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 ld: fatal: File processing errors. No output written to stats.so *** Error code 1 make: Fatal error: Command failed for target `stats.so' I did not have any problem when I compiled v2.2.1 as below: cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm mkdir ../../../../library/stats/libs Thank you very much!! Dongseok Choi, Ph.D. Assistant Professor Division of Biostatistics Department of Public Health & Preventive Medicine Oregon Health & Science University 3181 SW Sam Jackson Park Road, CB-669 Portland, OR 97239-3098 TEL) 503-494-5336 FAX) 503-494-4981 choid@ohsu.edu [[alternative HTML version deleted]]
Prof Brian Ripley
2006-Jul-19 21:39 UTC
[R] error when compiling "stats" library in R-2.3.1 on Solaris x86
How did 'cc -xtarget=generic64' get there? AFAIK R does not know about it, so presumably you specified it for CC. You need to do the same thing for *all* the compilers, that is CC, CXX, F77 and FC. The INSTALL file asked you to read the R-admin manual: there you will find a very similar example for 64-bit Sparc Solaris. That uses -xarch, which seems preferred to -xtarget (or at least to generic targets). On Wed, 19 Jul 2006, Dongseok Choi wrote:> Hello, > > I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. > I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. > Could you tell me how to fix this problem? > > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 > ld: fatal: File processing errors. No output written to stats.so > *** Error code 1 > make: Fatal error: Command failed for target `stats.so' > > I did not have any problem when I compiled v2.2.1 as below: > > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > mkdir ../../../../library/stats/libs > > > Thank you very much!! > > > > > Dongseok Choi, Ph.D. > Assistant Professor > Division of Biostatistics > Department of Public Health & Preventive Medicine > Oregon Health & Science University > 3181 SW Sam Jackson Park Road, CB-669 > Portland, OR 97239-3098 > TEL) 503-494-5336 > FAX) 503-494-4981 > choid at ohsu.edu > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
Dongseok Choi
2006-Jul-19 22:02 UTC
[R] error when compiling "stats" library in R-2.3.1 on Solaris x86
It was given iin the config.site. CC="cc -xtarget=generic64" CFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" F77="f95 -xtarget=generic64" FFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" CXX="CC -xtarget=generic64" CXXFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" CPPFLAGS="-I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include" I am not sure why it was not passed to f95 while it was OK with cc. I did not have any problem with R2.2.1. Please let me know if you need any other info. Thanks again, Dongseok>>> "Prof Brian Ripley" <ripley@stats.ox.ac.uk> 7/19/2006 2:39 PM >>>How did 'cc -xtarget=generic64' get there? AFAIK R does not know about it, so presumably you specified it for CC. You need to do the same thing for *all* the compilers, that is CC, CXX, F77 and FC. The INSTALL file asked you to read the R-admin manual: there you will find a very similar example for 64-bit Sparc Solaris. That uses -xarch, which seems preferred to -xtarget (or at least to generic targets). On Wed, 19 Jul 2006, Dongseok Choi wrote:> Hello, > > I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. > I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. > Could you tell me how to fix this problem? > > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 > ld: fatal: File processing errors. No output written to stats.so > *** Error code 1 > make: Fatal error: Command failed for target `stats.so' > > I did not have any problem when I compiled v2.2.1 as below: > > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > mkdir ../../../../library/stats/libs > > > Thank you very much!! > > > > > Dongseok Choi, Ph.D. > Assistant Professor > Division of Biostatistics > Department of Public Health & Preventive Medicine > Oregon Health & Science University > 3181 SW Sam Jackson Park Road, CB-669 > Portland, OR 97239-3098 > TEL) 503-494-5336 > FAX) 503-494-4981 > choid@ohsu.edu > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 [[alternative HTML version deleted]]
Dongseok Choi
2006-Jul-19 22:38 UTC
[R] error when compiling "stats" library in R-2.3.1 on Solaris x86
Dear Prof. Ripley, Following your advice, I read the manual and I realized that I missed two lines in my config.site. FC="f95 -xtarget=generic64" FCFLAGS="-O -I/mounts/devel/SUNWspro/prod/include" This solved my problem. It seemed that these two lines are new since R-2.3.0. I am updating from R-2.2.1. I am very sorry about not reading the manual carefully. ;) Thanks for your help! Dongseok>>> "Prof Brian Ripley" <ripley@stats.ox.ac.uk> 7/19/2006 2:39 PM >>>How did 'cc -xtarget=generic64' get there? AFAIK R does not know about it, so presumably you specified it for CC. You need to do the same thing for *all* the compilers, that is CC, CXX, F77 and FC. The INSTALL file asked you to read the R-admin manual: there you will find a very similar example for 64-bit Sparc Solaris. That uses -xarch, which seems preferred to -xtarget (or at least to generic targets). On Wed, 19 Jul 2006, Dongseok Choi wrote:> Hello, > > I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. > I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. > Could you tell me how to fix this problem? > > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > ld: fatal: file bsplvd.o: wrong ELF class: ELFCLASS32 > ld: fatal: File processing errors. No output written to stats.so > *** Error code 1 > make: Fatal error: Command failed for target `stats.so' > > I did not have any problem when I compiled v2.2.1 as below: > > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c family.c -o family.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bsplvd.f -o bsplvd.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalue.f -o bvalue.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c bvalus.f -o bvalus.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c loessf.f -o loessf.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c ppr.f -o ppr.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c qsbart.f -o qsbart.o > cc -xtarget=generic64 -I../../../../include -I/mounts/devel/SUNWspro/prod/include -I/mounts/devel/GNU/repoz/readline43/include -D__NO_MATH_INLINES -KPIC -O -I/mounts/devel/SUNWspro/prod/include -c sbart.c -o sbart.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sinerp.f -o sinerp.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sslvrg.f -o sslvrg.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stxwx.f -o stxwx.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c hclust.f -o hclust.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c kmns.f -o kmns.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c eureka.f -o eureka.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c stl.f -o stl.o > f95 -xtarget=generic64 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o > cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o carray.o filter.o mburg.o myw.o pacf.o qr.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o -xlic_lib=sunperf -lsunmath -Rreg -R/mounts/devel/SUNWspro/lib/amd64:/opt/SUNWspro/lib/amd64 -L/mounts/devel/SUNWspro/prod/lib/amd64 -L/lib/amd64 -L/usr/lib/amd64 -lfui -lfai -lfsu -lsunmath -lmtsk -lm > mkdir ../../../../library/stats/libs > > > Thank you very much!! > > > > > Dongseok Choi, Ph.D. > Assistant Professor > Division of Biostatistics > Department of Public Health & Preventive Medicine > Oregon Health & Science University > 3181 SW Sam Jackson Park Road, CB-669 > Portland, OR 97239-3098 > TEL) 503-494-5336 > FAX) 503-494-4981 > choid@ohsu.edu > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 [[alternative HTML version deleted]]
Maybe Matching Threads
- rgl install problem on Solaris 10 X86
- Building R for AIX in 32-bit mode - as preparation for building in 64-bit mode (changed subject!) - INFO/FEEDBACK - do not read as a bug report!
- compiling latest version of R
- Compilation fails (PR#209)
- could someone help me to install packages "gam" (ubuntu 6.06)