R help - Jul 2005 - interrupted Y axis

I did not find an answer to my question after a quick
search using the R
search engine so thought I'd ask away:

Does any know if there's a function exists to create
an interrupted Y axis?
What I mean by interrupted Y axis is that part of the
Y axis has been
removed or excised to permit one to see parts of the
data in more detail.

Perhaps an example will make this clear. Please go to
http://www.jbc.org/cgi/reprint/274/41/28950 and open
the PDF document
located there. Go to page 4, figure 2c provides a
crude example of what I
mean by interrupted Y axis. Part of the Y axis between
800 and 4500 has been
removed to permit easy inspection of the upper end of
the range of data.
(This is not my work but simply an example of what I'm
trying to describe.)
One finds these interrupted Y axis graphs in
newspapers or other
periodicals, more often than not as a bar chart.

Does a function in R exist to permit on to this easily
to a graph? If not,
would such a function be useful? If yes, would the
grid package be the right
tool for me to try and implement this?
~Nick

On 7/2/05, Nick Drew <drewbrewit at yahoo.com>
wrote:
> I did not find an answer to my question after a quick
> search using the R
> search engine so thought I'd ask away:
> 
> Does any know if there's a function exists to create
> an interrupted Y axis?
> What I mean by interrupted Y axis is that part of the
> Y axis has been
> removed or excised to permit one to see parts of the
> data in more detail.
> 
> Perhaps an example will make this clear. Please go to
> http://www.jbc.org/cgi/reprint/274/41/28950 and open
> the PDF document
> located there. Go to page 4, figure 2c provides a
> crude example of what I
> mean by interrupted Y axis. Part of the Y axis between
> 800 and 4500 has been
> removed to permit easy inspection of the upper end of
> the range of data.
> (This is not my work but simply an example of what I'm
> trying to describe.)
> One finds these interrupted Y axis graphs in
> newspapers or other
> periodicals, more often than not as a bar chart.
> 
> Does a function in R exist to permit on to this easily
> to a graph? If not,
> would such a function be useful? If yes, would the
> grid package be the right
> tool for me to try and implement this?

See axis.break in the plotrix package.

On Sat, 2005-07-02 at 06:09 -0700, Nick Drew wrote:
> I did not find an answer to my question after a quick
> search using the R
> search engine so thought I'd ask away:
> 
> Does any know if there's a function exists to create
> an interrupted Y axis?
> What I mean by interrupted Y axis is that part of the
> Y axis has been
> removed or excised to permit one to see parts of the
> data in more detail.
> 
> Perhaps an example will make this clear. Please go to
> http://www.jbc.org/cgi/reprint/274/41/28950 and open
> the PDF document
> located there. Go to page 4, figure 2c provides a
> crude example of what I
> mean by interrupted Y axis. Part of the Y axis between
> 800 and 4500 has been
> removed to permit easy inspection of the upper end of
> the range of data.
> (This is not my work but simply an example of what I'm
> trying to describe.)
> One finds these interrupted Y axis graphs in
> newspapers or other
> periodicals, more often than not as a bar chart.
> 
> Does a function in R exist to permit on to this easily
> to a graph? If not,
> would such a function be useful? If yes, would the
> grid package be the right
> tool for me to try and implement this?
> ~Nick
Using:

RSiteSearch("axis break")

comes up with 78 hits. You might want to consider some of the approaches
taken, including the axis.break() function in the 'plotrix' package on
CRAN.

Note however that the examples (ie. newspapers) you site are called "Pop
Charts" by Bill Cleveland in his book The Elements of Graphing Data and
are highly criticized.

If you have such disparate ranges you might want to consider separate
plots and/or log scaling. Be careful however, that expanding the
vertical axis to isolate specific data can result in the visual
perception of significant difference where none exists. This notion is
also explored by Cleveland and Tufte ("The Visual Display of
Quantitative Information").

HTH,

Marc Schwartz

Nick Drew wrote:
> I did not find an answer to my question after a quick
> search using the R
> search engine so thought I'd ask away:
> 
> Does any know if there's a function exists to create
> an interrupted Y axis?
> What I mean by interrupted Y axis is that part of the
> Y axis has been
> removed or excised to permit one to see parts of the
> data in more detail.
> 
> Perhaps an example will make this clear. Please go to
> http://www.jbc.org/cgi/reprint/274/41/28950 and open
> the PDF document
> located there. Go to page 4, figure 2c provides a
> crude example of what I
> mean by interrupted Y axis. Part of the Y axis between
> 800 and 4500 has been
> removed to permit easy inspection of the upper end of
> the range of data.
> (This is not my work but simply an example of what I'm
> trying to describe.)
> One finds these interrupted Y axis graphs in
> newspapers or other
> periodicals, more often than not as a bar chart.
> 
> Does a function in R exist to permit on to this easily
> to a graph? If not,
> would such a function be useful? If yes, would the
> grid package be the right
> tool for me to try and implement this?
> ~Nick
> 
As Gabor and Mark have already pointed out, axis.break() in the plotrix 
package will do the axis break. You will also have to create custom axis 
labels using axis(). However, the plotting function used in the paper 
you cite also breaks the bars that extend to the upper range (nice 
touch, wish I had thought of that). I'm not sure if any of the barplot* 
functions will do this out of the box. I would probably fake the bottom 
and top sections with homemade bars using rect() if I had this problem. 
Anybody have a better idea?

Jim