Hello,
I am beginner user of R. I am trying to use GeneNet package. I started by the
example on this link:
http://strimmerlab.org/software/genenet/download/arabidopsis-net.R
However I am getting an error at this line:system("fdp -T svg -o
arthdyn.svg arthdyn.dot") # SVG format
sh: fdp: command not found
I tried to search how to intall the fdp command but could not find explanation.
I am running my code on Rstudio .95.263 and Mac OS X 10.6.8
Can you please help me to solve this problem or is there is another way to
visualize the network
Thanks,
H
[[alternative HTML version deleted]]
Hello,
I am beginner user of R. I am trying to use GeneNet package. I started by the
example on this link:
http://strimmerlab.org/software/genenet/download/arabidopsis-net.R
However I am getting an error at this line:system("fdp -T svg -o
arthdyn.svg arthdyn.dot") # SVG format
sh: fdp: command not found
I tried to search how to intall the fdp command but could not find explanation.
I am running my code on Rstudio .95.263 and Mac OS X 10.6.8
Can you please help me to solve this problem or is there is another way to
visualize the network
Thanks,
H
[[alternative HTML version deleted]]
1. Why do you ask here rather than the author of thr webpage? 2. Reading the comments suggests you are lacking a graphviz installation that includes the fdp command. Uwe Ligges On 23.03.2012 13:09, Heba S wrote:> > > > > > > > > Hello, > I am beginner user of R. I am trying to use GeneNet package. I started by the example on this link: > http://strimmerlab.org/software/genenet/download/arabidopsis-net.R > However I am getting an error at this line:system("fdp -T svg -o arthdyn.svg arthdyn.dot") # SVG format > sh: fdp: command not found > > I tried to search how to intall the fdp command but could not find explanation. I am running my code on Rstudio .95.263 and Mac OS X 10.6.8 > Can you please help me to solve this problem or is there is another way to visualize the network > Thanks, > H > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.