similar to: fdp c

Hi! I am trying to install the RMySQL package. The installation stops with the following error message. path to mysql is set. setenv PKG_CPPFLAGS /home/arabidopsis/software/R1.9.1/linux/mysql/include setenv PKG_LIBS /home/arabidopsis/software/R1.9.1/linux/mysql/lib R CMD INSTALL RMySQL_0.5-5.tar.gz #....cut cut. creating src/Makevars ** libs gcc

Hello: I have looked at the bnlearn and deal packages for infering bayesian network. Can anyone suggest any other suitable package for constructing bayesian gene regulatory network using gene expression data? Thanks! John [[alternative HTML version deleted]]

The idea behind this change is to add support for different "ssh-agents" being able to run at the same time. It does not change the current behaviour of the ssh-agent (which will set SSH_AUTH_SOCK just for itself). Neither does it change the behaviour of SSH_AGENT_PID (which still supports only one pid). The new implementation will go through the list of sockets (which are separated by a

Hi, It's unfortunate that with recent revisions of R 2.13 (this appeared in revision 54640, March 2), 'R CMD build' now removes empty dirs in the package. People might have good reasons for having empty dirs in their packages. For example, in Bioconductor, we have some tools to automatically generate annotation packages and those tools are implemented in software packages that use

Dear R-devel, Can anyone give me some hints on how to go about debugging a strange segfault in my randomForest package? Here's the scoop: A user reported segfault when running predict() in the randomForest package. I asked for the data and code. The combination runs fine under WinXPPro, but does give segfault on one of our Linux boxes running R (1.7.0 through R-devel_2004-01-08) on

Hello,I am trying to install a newer version of R (R 2.14.2) from this linkhttp://cran.r-project.org/bin/macosx/ However I am getting an error that it can not be installed on my computer. My Mac is version 10.6.8. Can you please advise me what the problem. I need the newer version to install the ggm package. Thanks, Heba [[alternative HTML version deleted]]

I have a data set like this ID=c("A","A","A","A","A","A","A","B","B","B","B","B","B","B") s=c(1.1,2.2,1.3,1.1,3.1,4.1,4.2,1.1,2.2,1.3,1.1,3.1,4.1,4.2) d=c(1,2,3,4,5,6,7,1,2,3,4,5,6,7) t=c(-3,-2,-1,0,1,2,3,-3,-2,-1,0,1,2,3)

I am running Ubuntu 10.04 (on a Windows machine with dual boot) and I having a very hard time trying to recover from what I initially thought was a minor problem. I was trying to install "rattle()" and it failed, and after that I cannot get R to run AT ALL! I've tried multiple times to reinstall it with a clean apt-get removal and install and nothing... I keep get the following

I have a data set like this ID=c("A","A","A","A","A","A","A","B","B","B","B","B","B","B") s=c(1.1,2.2,1.3,1.1,3.1,4.1,4.2,1.1,2.2,1.3,1.1,3.1,4.1,4.2) d=c(1,2,3,4,5,6,7,1,2,3,4,5,6,7) t=c(-3,-1,0,1,2,3,4,-3,-2,-1,0,1,2,3)

Full_Name: David D Degras Version: 2.8.0 OS: Mac OS X Submission from: (NULL) (128.135.239.11) I have recently installed the version 2.8.0 of R along with package fda (v 2.0.2) and its dependencies (including package splines v. 2.8.0). Here are my problems: 1) The package splines should feature functions such a predict.bs, predict.bSpline and such and it does not! I can make calls to bs, ns,

Dear R-colleagues, I am quite a newbie to R fighting my stupidity to solve a probably quite simple problem of generating artificial data with defined features. I am conducting a study of inter-observer-agreement in child-bronchoscopy. One of the most important measures is Kappa according to Fleiss, which is very comfortable available in R through the irr-package. Unfortunately medical doctors

Hello list. I need help (e.g., a reference, code, package, etc.) in calculating the joint entropy of many variables (some sure highly mutually-informative and some not). Is there anyone here who knows a computationally-efficient solution (such as an R package)? I appreciate you help ... Best, Reza [[alternative HTML version deleted]]

The first patch really isn''t as much of a follow-up than what triggered the security issues to be noticed in the first place. 1: x86: preserve FPU selectors for 32-bit guest code 2: x86: fix XCR0 handling 3: x86/xsave: adjust state management 4: x86/fxsave: bring in line with recent xsave adjustments The first two I would see as candidates for 4.3 (as well as subsequent backporting,

Is anyone currently working on updating the Kerberos documentation in the Handbook? if so, I'd like to help. If not, I'm hoping to find someone who can get me up to speed on the FreeBSD docbook extensions :-) -T -- "The truly paranoid administrator may wish to place motion detectors in the air ducts." - Practical UNIX & Internet Security, 2nd Edition

Hallo, I need your help. I fitted my distribution of data with beta-prime, I need now to plot the Cumulative distribution. For other distribution like Gamma is easy: x <- seq (0, 100, 0.5) plot(x,pgamma(x, shape, scale), type= "l", col="red") but what about beta-prime? In R it exists only pbeta which is intended only for the beta distribution (not beta-prime) This is

Hi, There is an excellent article at http://www.biomedcentral.com/1471-2105/9/307 by Stroble, et al. describing variable importance in random forests. Does anyone have any suggestions (besides imputation or removal of cases) for how to deal with data that *have* missing data for predictor variables? Below is an excerpt of some code referenced in the article. I have commented out one line and

Hi - When I'm trying to read in a text file into a labeled character array, the memory stamp/footprint of R will exceed 4 gigs or more. I've seen this behavior on Mac OS X, Linux for AMD_64 and X86_64., and the R versions are 2.4, 2.4 and 2.2, respectively. So, it would seem that this is platform and R version independant. The file that I'm reading contains the upstream regions

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

HI, May be this helps: dat1<- read.table(text=" date1 time????????????????? date??????? timeSec topic pupilId correct 02/01/2013 14:58 02/01/2013 140323 fdp.fdp 40 TRUE 02/01/2013 14:59 02/01/2013 140372 fdp.fdp 150 TRUE 03/01/2013 11:23 03/01/2013 213833 fdp.percentage_calc_foundation 15 TRUE 03/01/2013 11:23 03/01/2013 213839 fdp.percentage_calc_foundation 57 TRUE 03/01/2013 11:24

I've been trying to cut down the size of openssh so I can run it on my Nokia 770. One thing which helps a fair amount (and will help even more when I get '-ffunction-sections -fdata-sections --gc-sections' working) is to have the option of compiling out privilege separation... Is it worth me tidying this up and trying to make it apply properly to the OpenBSD version? Does the openbsd