search for: genenet

Hello, I am beginner user of R. I am trying to use GeneNet package. I started by the example on this link: http://strimmerlab.org/software/genenet/download/arabidopsis-net.R However I am getting an error at this line:system("fdp -T svg -o arthdyn.svg arthdyn.dot") # SVG format sh: fdp: command not found I tried to search how to intall the fdp co...

Hello: I have looked at the bnlearn and deal packages for infering bayesian network. Can anyone suggest any other suitable package for constructing bayesian gene regulatory network using gene expression data? Thanks! John [[alternative HTML version deleted]]

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is