Friedericksen Hope
2010-Nov-11 08:05 UTC
[R] How to get a specific named element in a nested list
Hello, I have a nested named list structure, like the following: x <- list( list( list(df1,df2) list(df3, list(df4,df5)) list(df6,df7))) with df1...d7 as data frames. Every data frame is named. Is there a way to get a specific named element in x? so, for example, x[[c("df5")]] gives me the data frame 5? Thank you in advance! Best, Friedericksen
Ivan Calandra
2010-Nov-11 09:23 UTC
[R] How to get a specific named element in a nested list
Hi, A reproducible example would have been nice, but a correct code even more (you forgot some commas)! So if you meant this: x <- list( list( list(df1,df2), list(df3, list(df4,df5)), list(df6,df7))) check str(x): (I removes the details of each df) List of 1 $ :List of 3 ..$ :List of 2 .. ..$ :'data.frame': 10 obs. of 2 variables: ## df1 .. ..$ :'data.frame': 10 obs. of 2 variables: ## df2 ..$ :List of 2 .. ..$ :'data.frame': 10 obs. of 2 variables: ## df3 .. ..$ :List of 2 .. .. ..$ :'data.frame': 10 obs. of 2 variables: ## df4 .. .. ..$ :'data.frame': 10 obs. of 2 variables: ## df5 ..$ :List of 2 .. ..$ :'data.frame': 10 obs. of 2 variables: ## df6 .. ..$ :'data.frame': 10 obs. of 2 variables: ## df7 And check x: (I removed the details again) [[1]] [[1]][[1]] [[1]][[1]][[1]] df1 [[1]][[1]][[2]] df2 [[1]][[2]] [[1]][[2]][[1]] df3 [[1]][[2]][[2]] [[1]][[2]][[2]][[1]] df4 [[1]][[2]][[2]][[2]] df5 [[1]][[3]] [[1]][[3]][[1]] df6 [[1]][[3]][[2]] df7 If you want to access them, you need to follow the structure of your list, e.g. for df1: x[[1]][[1]][[1]] for df5: x[[1]][[2]][[2]][[2]] You need to access them with indexes because the list elements are unnamed. Now if you do: x <- list(uppermost=list( medium1=list(df1=df1,df2=df2), medium2=list(df3=df3, lowermost=list(df4=df4,df5=df5)), medium3=list(df6=df6,df7=df7))) You can access them with names (but you still need to follow the structure, i.e. x[[df5]] cannot work): For df1: x$uppermost$medium1$df1 or x[["uppermost"]][["medium1"]][["df1"]] for df5: x$uppermost$medium2$lowermost$df5 or x[["uppermost"]][["medium2"]][["lowermost"]][["df5"]] But I guess you can write a function that would "search" through the structure of x for a given df (that has to be named then) and return it. Maybe you have your reasons to have such a complicated list, but if it were me, I would make it easier to understand and to access (i.e. less nested, max 2 levels) HTH, Ivan Le 11/11/2010 09:05, Friedericksen Hope a ?crit :> Hello, > > I have a nested named list structure, like the following: > > x <- list( > list( > list(df1,df2) > list(df3, > list(df4,df5)) > list(df6,df7))) > > with df1...d7 as data frames. Every data frame is named. > > Is there a way to get a specific named element in x? > > so, for example, > > x[[c("df5")]] gives me the data frame 5? > > Thank you in advance! > > Best, > Friedericksen > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Ivan CALANDRA PhD Student University of Hamburg Biozentrum Grindel und Zoologisches Museum Abt. S?ugetiere Martin-Luther-King-Platz 3 D-20146 Hamburg, GERMANY +49(0)40 42838 6231 ivan.calandra at uni-hamburg.de ********** http://www.for771.uni-bonn.de http://webapp5.rrz.uni-hamburg.de/mammals/eng/mitarbeiter.php
Michael Bedward
2010-Nov-11 09:55 UTC
[R] How to get a specific named element in a nested list
Hi Friedericksen, This function will do it. No doubt there are more elegant ways :) rmatch <- function(x, name) { pos <- match(name, names(x)) if (!is.na(pos)) return(x[[pos]]) for (el in x) { if (class(el) == "list") { out <- getEl(el, name) if (!is.null(out)) return(out) } } } Michael On 11 November 2010 19:05, Friedericksen Hope <friedericksen.hope at gmail.com> wrote:> Hello, > > I have a nested named list structure, like the following: > > x <- list( > ? ? ? ?list( > ? ? ? ? ? list(df1,df2) > ? ? ? ? ? list(df3, > ? ? ? ? ? ? ? ?list(df4,df5)) > ? ? ? ?list(df6,df7))) > > with df1...d7 as data frames. Every data frame is named. > > Is there a way to get a specific named element in x? > > so, for example, > > x[[c("df5")]] gives me the data frame 5? > > Thank you in advance! > > Best, > Friedericksen > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
Janko Thyson
2010-Nov-11 10:06 UTC
[R] How to get a specific named element in a nested list
What you want is some sort of indexing nested lists based on names (as we are used to for vectors, for example). As Ivan pointed out, I don't think there's an "out-of-the-box" function in R that supports such indexing as it requires some sort of mapping of the nested list's hierarchical structure. At first I thought one could use the information of 'as.relistable()' and 'relist()' in some way, but I couldn't really make use of it. So this is my own solution for retrieving all "branch names" of an arbitrary deeply nested list together with their recursive indexes which you then can use to index/access a branch of your choice. I'm sure there are more elegant ways, but at least it does the trick ;-). Currently requires that all branches are named and names at a branch are unique(!). E.g., this is fine: my.list=list(a=list(a.1=list(...), a.2=list(...)), b=list(...)); something like this is not supported yet: my.list=list(a=list(a.1=list(...), a.1=list(...)), a=list(...))). One could use regular expressions to handle "stubs" of names. Right now you must use the "absolute path name" (e.g. "a$a.1$a.1.1) of a branch to access it (you get this info via 'listnames.get()', though). But it should be easy to handle "stubs" (e.g. "a.1.1" only) as well. The two function defs and an example: ##### FUNCTION DEFS ##### listnames.get <- function( list.obj, do.basename=FALSE, do.name.chain=TRUE, ... ) { # VALIDATE if(!is.list(list.obj)) stop("Argument 'list.obj' must be a list.") # / #--------------------------------------------------------------------------- # CORE FUNCTION #--------------------------------------------------------------------------- listnames.get.core <- function( # CUSTOM: list.obj, do.basename=FALSE, do.name.chain=TRUE, buffer, ... ) { if(!exists("index", buffer)) { buffer$index <- new.env(parent=emptyenv()) buffer$index <- NULL buffer$name <- NULL } #x=1 jnk <- sapply(1:length(list.obj), function(x) { list.branch <- list.obj[x] list.branch.nme <- names(list.branch) if(do.basename) list.branch.nme <- basename(list.branch.nme) list.obj.updt <- list.branch[[1]] # UPDATE BUFFER buffer$run <- c(buffer$run, x) if(do.name.chain) { # buffer$name <- paste(buffer$name, list.branch.nme, sep="$") buffer$name <- c(buffer$name, list.branch.nme) } else { buffer$name <- list.branch.nme } # / index.crnt <- paste(as.character(buffer$run), collapse="-") index.crnt <- data.frame( name=paste(buffer$name, collapse="$"), index=index.crnt, stringsAsFactors=FALSE ) index.updt <- rbind(buffer$index, index.crnt) buffer$index <- index.updt if(is.list(list.obj.updt)) { listnames.get.core( list.obj=list.obj.updt, do.basename=do.basename, do.name.chain=do.name.chain, buffer=buffer ) } # UPDATE BUFFER buffer$run <- buffer$run[-length(buffer$run)] buffer$name <- buffer$name[-length(buffer$name)] # / return(NULL) }) return(TRUE) } # /CORE FUNCTION ---------- #--------------------------------------------------------------------------- # APPLICATION #--------------------------------------------------------------------------- assign("buffer", new.env(parent=emptyenv()), envir=environment()) listnames.get.core( list.obj=list.obj, do.basename=do.basename, buffer=buffer ) # /APPLICATION ---------- return(buffer$index) } listbranch.get <- function( list.obj, query, do.strict=TRUE, do.rtn.val=TRUE, msg.error=NULL, ... ) { # VALIDATE if(!is.list(list.obj)) stop("Argument 'list.obj' must be a list.") # / # ESTABLISH LIST INDEX list.index <- listnames.get( list.obj=list.obj, do.basename=TRUE, do.name.chain=TRUE ) list.index.nms <- list.index$name # / query.0 <- query # SEARCH FOR QUERY if(do.strict) { query <- gsub("\\$", "\\\\$", query) query <- gsub("\\.", "\\\\.", query) query <- paste("^", query, "$", sep="") } else { stop("'do.strict = FALSE not supported yet as it may result in multiple results.") } idx <- grep(query, list.index.nms, perl=TRUE) if(!length(idx)) { if(is.null(msg.error)) { msg.error <- paste("Query not successful: '", query.0, "' ('", query, "')", sep="") } stop(cat(msg.error, sep="\n")) } # / # BUILDING RECURSIVE INDEX idx <- list.index$index[idx] idx <- as.numeric(unlist(strsplit(idx, split="-"))) # / if(do.rtn.val) { # RECURSIVE INDEXING rtn <- list.obj[[idx]] # / } else { rtn <- idx } return(rtn) } ##### EXAMPLE ##### my.list <- list( a=list(a.1="a", a.2=list(a.2.1="a", a.2.2="b"), a.3=list(a.3.1="a"), b=list(b.1=list(b.1.1="a"), b.2="b"), c="a" )) # RETRIEVE 'COMPLETE' INDEX (A DATA FRAME; NAMES AND INDEX) listnames.get(list.obj=my.list, do.basename=TRUE, do.name.chain=TRUE) # GET RECURSIVE INDEX ONLY idx <- listbranch.get(list.obj=my.list, query="a$a.2$a.2.2", do.strict=TRUE, do.rtn.val=FALSE) my.list[[idx]] # GET RECURSIVELY INDEXED 'BRANCH CONTENT' DIRECTLY my.list.sub <- listbranch.get(list.obj=my.list, query="a$a.2$a.2.2", do.strict=TRUE, do.rtn.val=TRUE) my.list.sub Hope this helps, Janko> -----Urspr?ngliche Nachricht----- > Von: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] Im > Auftrag von Friedericksen Hope > Gesendet: Donnerstag, 11. November 2010 09:05 > An: r-help at stat.math.ethz.ch > Betreff: [R] How to get a specific named element in a nested list > > Hello, > > I have a nested named list structure, like the following: > > x <- list( > list( > list(df1,df2) > list(df3, > list(df4,df5)) > list(df6,df7))) > > with df1...d7 as data frames. Every data frame is named. > > Is there a way to get a specific named element in x? > > so, for example, > > x[[c("df5")]] gives me the data frame 5? > > Thank you in advance! > > Best, > Friedericksen > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.html> and provide commented, minimal, self-contained, reproducible code.
Michael Bedward
2010-Nov-11 10:45 UTC
[R] How to get a specific named element in a nested list
On 11 November 2010 21:08, Janko Thyson <janko.thyson at ku-eichstaett.de> wrote:> > Could it be that you forgot to supply 'getEL()'? Or do I have to use some > package to make it available? >Oops - no. The problem was me stupidly renaming the function without modifying the code. Try this instead... rmatch <- function(x, name) { pos <- match(name, names(x)) if (!is.na(pos)) return(x[[pos]]) for (el in x) { if (class(el) == "list") { out <- rmatch(el, name) if (!is.null(out)) return(out) } } } Sorry about that. Michael>> -----Urspr?ngliche Nachricht----- >> Von: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] Im >> Auftrag von Michael Bedward >> Gesendet: Donnerstag, 11. November 2010 10:56 >> An: friedericksen.hope at gmail.com >> Cc: r-help at stat.math.ethz.ch >> Betreff: Re: [R] How to get a specific named element in a nested list >> >> Hi Friedericksen, >> >> This function will do it. No doubt there are more elegant ways :) >> >> rmatch <- function(x, name) { >> ? pos <- match(name, names(x)) >> ? if (!is.na(pos)) >> ? ? return(x[[pos]]) >> >> ? for (el in x) { >> ? ? if (class(el) == "list") { >> ? ? ? out <- getEl(el, name) >> ? ? ? if (!is.null(out)) return(out) >> ? ? } >> ? } >> } >> >> >> Michael >> >> On 11 November 2010 19:05, Friedericksen Hope >> <friedericksen.hope at gmail.com> wrote: >> > Hello, >> > >> > I have a nested named list structure, like the following: >> > >> > x <- list( >> > ? ? ? ?list( >> > ? ? ? ? ? list(df1,df2) >> > ? ? ? ? ? list(df3, >> > ? ? ? ? ? ? ? ?list(df4,df5)) >> > ? ? ? ?list(df6,df7))) >> > >> > with df1...d7 as data frames. Every data frame is named. >> > >> > Is there a way to get a specific named element in x? >> > >> > so, for example, >> > >> > x[[c("df5")]] gives me the data frame 5? >> > >> > Thank you in advance! >> > >> > Best, >> > Friedericksen >> > >> > ______________________________________________ >> > R-help at r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-help >> > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html >> > and provide commented, minimal, self-contained, reproducible code. >> > >> >> ______________________________________________ >> R-help at r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > >
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