Adam Zeilinger
2014-Jul-09 22:08 UTC
Installing rgdal and rjags packages on a linux cluster
Dear R Help, I'm trying to install the rjags and rgdal packages on a linux cluster running R 3.0.3. However, I'm having problems installing them successfully. Both packages require external programs (JAGS and GDAL, respectively), which have been successfully installed. For rjags, the error message reads: "configure: error: "Location of JAGS headers not defined. Use configure arg '--with-jags-include' or environment variable 'JAGS_INCLUDE'"" I tried the following: > install.packages("rjags", configure.args = list("--with-jags-include")) This returns a different error: "configure: error: "Problem with header file yes/Console.h"" From my readings of various help pages, it seems that I need to download the developer version of the rjags package, in order to supply the header files. Is this correct? If so, where do I find developer packages and how do I install them? R package development is new to me. For rgdal, the error message reads: "Error: gdal-config not found The gdal-config script distributed with GDAL could not be found." Here, it's my understanding that I need to install PROJ.4 libraries and the developer versions of the rgdal and proj4 packages. Is this correct? Are the problems with installing rjags and rgdal basically the same? Could the problems be caused by running an older version of R? Any help would be greatly appreciated. Adam Zeilinger -- Adam Zeilinger Postdoctoral scholar Berkeley Initiative for Global Change Biology University of California Berkeley http://www.linkedin.com/in/adamzeilinger/