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usha2013

2012-Dec-28 07:02 UTC

[R] help with reshaping wide to long format

Hi, Sorry, but how did you bring it out?

Thanks

On Fri, Dec 28, 2012 at 8:48 AM, arun kirshna [via R] <
ml-node+s789695n4654093h10@n4.nabble.com> wrote:
> Hi,
> bp.sub<- structure(list(CODEA = c(1L, 3L, 4L, 7L, 8L, 9L, 10L, 11L, 12L,
> 13L, 14L, 16L, 17L), C45 = c(NA, 2L, 2L, 2L, 2L, 1L, NA, 1L,
> 1L, 2L, 1L, 2L, 1L), ragek = c(3L, 3L, 3L, 4L, 4L, 3L, 3L, 3L,
> 3L, 3L, 3L, 3L, 3L), ra80 = c(4L, 3L, 6L, 6L, 4L, 6L, 3L, 4L,
> 4L, 4L, 4L, 4L, 4L), ra98 = c(1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L,
> 2L, 2L, 2L, 3L, 1L), CBCLAggressionAt1410 = c(NA, 0L, NA, 0L,
> 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), CBCLInternalisingAt1410 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Obese14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Obese21 = c(NA,
> 0L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Overweight14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Overweight21 = c(NA,
> 1L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 1L, 0L, NA), hibp14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 1L, 1L, NA), hibp21 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 1L, NA, NA)), .Names =
c("CODEA",
> "C45", "ragek", "ra80", "ra98",
"CBCLAggressionAt1410",
> "CBCLInternalisingAt1410",
> "Obese14", "Obese21", "Overweight14",
"Overweight21", "hibp14",
> "hibp21"), row.names = c(NA, 13L), class =
"data.frame")
>
> BP.stack1<- reshape(bp.sub,sep="",timevar>
"time",direction="long",varying=list(names(bp.sub[8:9]),names(bp.sub[10:11]),names(bp.sub[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")
>
> BP.stack1$time <- recode(BP.stack1$time,("1=14;2=21"))
>  BP.stack1
>  #    CODEA C45 ragek ra80 ra98 CBCLAggressionAt1410
> CBCLInternalisingAt1410
> #1.1      1  NA     3    4    1                   NA
>  NA
> #3.1      3   2     3    3    1                    0
> 0
> #4.1      4   2     3    6    1                   NA
>  NA
> #7.1      7   2     4    6    1                    0
> 0
> #8.1      8   2     4    4    1                    0
> 0
> #9.1      9   1     3    6    2                    0
> 0
> #10.1    10  NA     3    3    1                   NA
>  NA
> #11.1    11   1     3    4    1                    0
> 0
> #12.1    12   1     3    4    2                   NA
>  NA
> #13.1    13   2     3    4    2                   NA
>  NA
> #14.1    14   1     3    4    2                    0
> 0
> #16.1    16   2     3    4    3                    0
> 0
> #17.1    17   1     3    4    1                   NA
>  NA
> #1.2      1  NA     3    4    1                   NA
>  NA
> #3.2      3   2     3    3    1                    0
> 0
> #4.2      4   2     3    6    1                   NA
>  NA
> #7.2      7   2     4    6    1                    0
> 0
> #8.2      8   2     4    4    1                    0
> 0
> #9.2      9   1     3    6    2                    0
> 0
> #10.2    10  NA     3    3    1                   NA
>  NA
> #11.2    11   1     3    4    1                    0
> 0
> #12.2    12   1     3    4    2                   NA
>  NA
> #13.2    13   2     3    4    2                   NA
>  NA
> #14.2    14   1     3    4    2                    0
> 0
> #16.2    16   2     3    4    3                    0
> 0
> #17.2    17   1     3    4    1                   NA
>  NA
>   #   time Obese Overweight HiBP
> #1.1    14    NA         NA   NA
> #3.1    14     0          0    0
> #4.1    14    NA         NA   NA
> #7.1    14     0          0    0
> #8.1    14     0          0    0
> #9.1    14     0          0    0
> #10.1   14    NA         NA   NA
> #11.1   14    NA         NA   NA
> #2.1   14    NA         NA   NA
> #13.1   14    NA         NA   NA
> #14.1   14     0          0    1
> #16.1   14     0          0    1
> #17.1   14    NA         NA   NA
> #1.2    21    NA         NA   NA
> #3.2    21     0          1    0
> #4.2    21    NA         NA   NA
> #7.2    21     1          1    0
> #8.2    21     0          0    0
> #9.2    21     0          0    0
> #10.2   21    NA         NA   NA
> #11.2   21     0          0    0
> #12.2   21    NA         NA   NA
> #13.2   21    NA         NA   NA
> #14.2   21     0          1    1
> #16.2   21     0          0   NA
> #17.2   21    NA         NA   NA
>
names(bp.sub)[grep("\\d+",names(bp.sub))]<-gsub("(\\D+)(\\d+)","\\1_\\2",names(bp.sub)[grep("\\d+",names(bp.sub))])
>
> 
BP.stack2<-reshape(bp.sub,dir="long",varying=8:13,sep="_")
>  Bp.stack2
>       CODEA C_45 ragek ra_80 ra_98 CBCLAggressionAt_1410
> 1.14      1   NA     3     4     1                    NA
> 2.14      3    2     3     3     1                     0
> 3.14      4    2     3     6     1                    NA
> 4.14      7    2     4     6     1                     0
> 5.14      8    2     4     4     1                     0
> 6.14      9    1     3     6     2                     0
> 7.14     10   NA     3     3     1                    NA
> 8.14     11    1     3     4     1                     0
> 9.14     12    1     3     4     2                    NA
> 10.14    13    2     3     4     2                    NA
> 11.14    14    1     3     4     2                     0
> 12.14    16    2     3     4     3                     0
> 13.14    17    1     3     4     1                    NA
> 1.21      1   NA     3     4     1                    NA
> 2.21      3    2     3     3     1                     0
> 3.21      4    2     3     6     1                    NA
> 4.21      7    2     4     6     1                     0
> 5.21      8    2     4     4     1                     0
> 6.21      9    1     3     6     2                     0
> 7.21     10   NA     3     3     1                    NA
> 8.21     11    1     3     4     1                     0
> 9.21     12    1     3     4     2                    NA
> 10.21    13    2     3     4     2                    NA
> 11.21    14    1     3     4     2                     0
> 12.21    16    2     3     4     3                     0
> 13.21    17    1     3     4     1                    NA
>       CBCLInternalisingAt_1410 time Obese Overweight hibp id
> 1.14                        NA   14    NA         NA   NA  1
> 2.14                         0   14     0          0    0  2
> 3.14                        NA   14    NA         NA   NA  3
> 4.14                         0   14     0          0    0  4
> 5.14                         0   14     0          0    0  5
> 6.14                         0   14     0          0    0  6
> 7.14                        NA   14    NA         NA   NA  7
> 8.14                         0   14    NA         NA   NA  8
> 9.14                        NA   14    NA         NA   NA  9
> 10.14                       NA   14    NA         NA   NA 10
> 11.14                        0   14     0          0    1 11
> 12.14                        0   14     0          0    1 12
> 13.14                       NA   14    NA         NA   NA 13
> 1.21                        NA   21    NA         NA   NA  1
> 2.21                         0   21     0          1    0  2
> 3.21                        NA   21    NA         NA   NA  3
> 4.21                         0   21     1          1    0  4
> 5.21                         0   21     0          0    0  5
> 6.21                         0   21     0          0    0  6
> 7.21                        NA   21    NA         NA   NA  7
> 8.21                         0   21     0          0    0  8
> 9.21                        NA   21    NA         NA   NA  9
> 10.21                       NA   21    NA         NA   NA 10
> 11.21                        0   21     0          1    1 11
> 12.21                        0   21     0          0   NA 12
> 13.21                       NA   21    NA         NA   NA 13
> A.K.
>
>
>
>
>
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arun

2012-Dec-28 13:23 UTC

head link

[R] help with reshaping wide to long format

Hi,
DId you tried "copy and paste" the code in my reply?? If not, please
do.?

In your previous replies, you forgot to close the? bracket(")") or
adding "#" in between the codes.? Please check your codes.

It would be also helpful to read the posting guide
(http://www.r-project.org/posting-guide.html) and "An introduction to
R" (the link will be in the posting guide).

A.K.




----- Original Message -----
From: usha2013 <usha.nathan at gmail.com>
To: r-help at r-project.org
Cc: 
Sent: Friday, December 28, 2012 2:02 AM
Subject: Re: [R] help with reshaping wide to long format

Hi, Sorry, but how did you bring it out?

Thanks

On Fri, Dec 28, 2012 at 8:48 AM, arun kirshna [via R] <
ml-node+s789695n4654093h10 at n4.nabble.com> wrote:
> Hi,
> bp.sub<- structure(list(CODEA = c(1L, 3L, 4L, 7L, 8L, 9L, 10L, 11L, 12L,
> 13L, 14L, 16L, 17L), C45 = c(NA, 2L, 2L, 2L, 2L, 1L, NA, 1L,
> 1L, 2L, 1L, 2L, 1L), ragek = c(3L, 3L, 3L, 4L, 4L, 3L, 3L, 3L,
> 3L, 3L, 3L, 3L, 3L), ra80 = c(4L, 3L, 6L, 6L, 4L, 6L, 3L, 4L,
> 4L, 4L, 4L, 4L, 4L), ra98 = c(1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L,
> 2L, 2L, 2L, 3L, 1L), CBCLAggressionAt1410 = c(NA, 0L, NA, 0L,
> 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), CBCLInternalisingAt1410 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Obese14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Obese21 = c(NA,
> 0L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Overweight14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Overweight21 = c(NA,
> 1L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 1L, 0L, NA), hibp14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 1L, 1L, NA), hibp21 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 1L, NA, NA)), .Names =
c("CODEA",
> "C45", "ragek", "ra80", "ra98",
"CBCLAggressionAt1410",
> "CBCLInternalisingAt1410",
> "Obese14", "Obese21", "Overweight14",
"Overweight21", "hibp14",
> "hibp21"), row.names = c(NA, 13L), class =
"data.frame")
>
> BP.stack1<- reshape(bp.sub,sep="",timevar>
"time",direction="long",varying=list(names(bp.sub[8:9]),names(bp.sub[10:11]),names(bp.sub[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")
>
> BP.stack1$time <- recode(BP.stack1$time,("1=14;2=21"))
>? BP.stack1
>? #? ? CODEA C45 ragek ra80 ra98 CBCLAggressionAt1410
> CBCLInternalisingAt1410
> #1.1? ? ? 1? NA? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #3.1? ? ? 3?  2? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #4.1? ? ? 4?  2? ?  3? ? 6? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #7.1? ? ? 7?  2? ?  4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #8.1? ? ? 8?  2? ?  4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #9.1? ? ? 9?  1? ?  3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #10.1? ? 10? NA? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #11.1? ? 11?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #12.1? ? 12?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #13.1? ? 13?  2? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #14.1? ? 14?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #16.1? ? 16?  2? ?  3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
> 0
> #17.1? ? 17?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #1.2? ? ? 1? NA? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #3.2? ? ? 3?  2? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #4.2? ? ? 4?  2? ?  3? ? 6? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #7.2? ? ? 7?  2? ?  4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #8.2? ? ? 8?  2? ?  4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #9.2? ? ? 9?  1? ?  3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #10.2? ? 10? NA? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #11.2? ? 11?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #12.2? ? 12?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #13.2? ? 13?  2? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #14.2? ? 14?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #16.2? ? 16?  2? ?  3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
> 0
> #17.2? ? 17?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
>?  #?  time Obese Overweight HiBP
> #1.1? ? 14? ? NA? ? ? ?  NA?  NA
> #3.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #4.1? ? 14? ? NA? ? ? ?  NA?  NA
> #7.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #8.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #9.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #10.1?  14? ? NA? ? ? ?  NA?  NA
> #11.1?  14? ? NA? ? ? ?  NA?  NA
> #2.1?  14? ? NA? ? ? ?  NA?  NA
> #13.1?  14? ? NA? ? ? ?  NA?  NA
> #14.1?  14? ?  0? ? ? ? ? 0? ? 1
> #16.1?  14? ?  0? ? ? ? ? 0? ? 1
> #17.1?  14? ? NA? ? ? ?  NA?  NA
> #1.2? ? 21? ? NA? ? ? ?  NA?  NA
> #3.2? ? 21? ?  0? ? ? ? ? 1? ? 0
> #4.2? ? 21? ? NA? ? ? ?  NA?  NA
> #7.2? ? 21? ?  1? ? ? ? ? 1? ? 0
> #8.2? ? 21? ?  0? ? ? ? ? 0? ? 0
> #9.2? ? 21? ?  0? ? ? ? ? 0? ? 0
> #10.2?  21? ? NA? ? ? ?  NA?  NA
> #11.2?  21? ?  0? ? ? ? ? 0? ? 0
> #12.2?  21? ? NA? ? ? ?  NA?  NA
> #13.2?  21? ? NA? ? ? ?  NA?  NA
> #14.2?  21? ?  0? ? ? ? ? 1? ? 1
> #16.2?  21? ?  0? ? ? ? ? 0?  NA
> #17.2?  21? ? NA? ? ? ?  NA?  NA
>
names(bp.sub)[grep("\\d+",names(bp.sub))]<-gsub("(\\D+)(\\d+)","\\1_\\2",names(bp.sub)[grep("\\d+",names(bp.sub))])
>
>?
BP.stack2<-reshape(bp.sub,dir="long",varying=8:13,sep="_")
>? Bp.stack2
>? ? ?  CODEA C_45 ragek ra_80 ra_98 CBCLAggressionAt_1410
> 1.14? ? ? 1?  NA? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 2.14? ? ? 3? ? 2? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ?  0
> 3.14? ? ? 4? ? 2? ?  3? ?  6? ?  1? ? ? ? ? ? ? ? ? ? NA
> 4.14? ? ? 7? ? 2? ?  4? ?  6? ?  1? ? ? ? ? ? ? ? ? ?  0
> 5.14? ? ? 8? ? 2? ?  4? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 6.14? ? ? 9? ? 1? ?  3? ?  6? ?  2? ? ? ? ? ? ? ? ? ?  0
> 7.14? ?  10?  NA? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ? NA
> 8.14? ?  11? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 9.14? ?  12? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 10.14? ? 13? ? 2? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 11.14? ? 14? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ?  0
> 12.14? ? 16? ? 2? ?  3? ?  4? ?  3? ? ? ? ? ? ? ? ? ?  0
> 13.14? ? 17? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 1.21? ? ? 1?  NA? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 2.21? ? ? 3? ? 2? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ?  0
> 3.21? ? ? 4? ? 2? ?  3? ?  6? ?  1? ? ? ? ? ? ? ? ? ? NA
> 4.21? ? ? 7? ? 2? ?  4? ?  6? ?  1? ? ? ? ? ? ? ? ? ?  0
> 5.21? ? ? 8? ? 2? ?  4? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 6.21? ? ? 9? ? 1? ?  3? ?  6? ?  2? ? ? ? ? ? ? ? ? ?  0
> 7.21? ?  10?  NA? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ? NA
> 8.21? ?  11? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 9.21? ?  12? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 10.21? ? 13? ? 2? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 11.21? ? 14? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ?  0
> 12.21? ? 16? ? 2? ?  3? ?  4? ?  3? ? ? ? ? ? ? ? ? ?  0
> 13.21? ? 17? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
>? ? ?  CBCLInternalisingAt_1410 time Obese Overweight hibp id
> 1.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 1
> 2.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 2
> 3.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 3
> 4.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 4
> 5.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 5
> 6.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 6
> 7.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 7
> 8.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ? NA? ? ? ?  NA?  NA? 8
> 9.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 9
> 10.14? ? ? ? ? ? ? ? ? ? ?  NA?  14? ? NA? ? ? ?  NA?  NA 10
> 11.14? ? ? ? ? ? ? ? ? ? ? ? 0?  14? ?  0? ? ? ? ? 0? ? 1 11
> 12.14? ? ? ? ? ? ? ? ? ? ? ? 0?  14? ?  0? ? ? ? ? 0? ? 1 12
> 13.14? ? ? ? ? ? ? ? ? ? ?  NA?  14? ? NA? ? ? ?  NA?  NA 13
> 1.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 1
> 2.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 1? ? 0? 2
> 3.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 3
> 4.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  1? ? ? ? ? 1? ? 0? 4
> 5.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 5
> 6.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 6
> 7.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 7
> 8.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 8
> 9.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 9
> 10.21? ? ? ? ? ? ? ? ? ? ?  NA?  21? ? NA? ? ? ?  NA?  NA 10
> 11.21? ? ? ? ? ? ? ? ? ? ? ? 0?  21? ?  0? ? ? ? ? 1? ? 1 11
> 12.21? ? ? ? ? ? ? ? ? ? ? ? 0?  21? ?  0? ? ? ? ? 0?  NA 12
> 13.21? ? ? ? ? ? ? ? ? ? ?  NA?  21? ? NA? ? ? ?  NA?  NA 13
> A.K.
>
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arun

2012-Dec-30 18:25 UTC

head link

[R] help with reshaping wide to long format

HI Usha,
I tried the codes on the full dataset.? This is what I get:
BP_2b<-read.csv("BP_2b.csv",sep="\t")
#head(BP_2b,2)
#? CODEA Sex MaternalAge Education Birthplace AggScore IntScore Obese14
#1???? 1? NA?????????? 3???????? 4????????? 1?????? NA?????? NA????? NA
#2???? 3?? 2?????????? 3???????? 3????????? 1??????? 0??????? 0?????? 0
?# Overweight14 Overweight21 Obese21 hibp14 hibp21
#1?????????? NA?????????? NA????? NA???? NA???? NA
#2??????????? 0??????????? 1?????? 0????? 0????? 0
BP.stack1<-
 reshape(BP_2b,sep="",timevar= 
"time",direction="long",varying=list(names(BP_2b[8:9]),names(BP_2b[10:11]),names(BP_2b[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")

BP_2b<-BP_2b[,c(1:8,11,9:10,12:13)] #Obese21 was not adjacent to Obese14.?
So, I rearranged the columns to make it adjacent.
str(BP_2b)
#'data.frame':??? 6898 obs. of? 13 variables:
# $ CODEA?????? : int? 1 3 4 7 8 9 10 11 12 13 ...
# $ Sex???????? : int? NA 2 2 2 2 1 NA 1 1 2 ...
# $ MaternalAge : int? 3 3 3 4 4 3 3 3 3 3 ...
# $ Education?? : int? 4 3 6 6 4 6 3 4 4 4 ...
# $ Birthplace? : int? 1 1 1 1 1 2 1 1 2 2 ...
# $ AggScore??? : int? NA 0 NA 0 0 0 NA 0 NA NA ...
# $ IntScore??? : int? NA 0 NA 0 0 0 NA 0 NA NA ...
# $ Obese14???? : int? NA 0 NA 0 0 0 NA NA NA NA ...
# $ Obese21???? : int? NA 0 NA 1 0 0 NA 0 NA NA ...
# $ Overweight14: int? NA 0 NA 0 0 0 NA NA NA NA ...
# $ Overweight21: int? NA 1 NA 1 0 0 NA 0 NA NA ...
# $ hibp14????? : int? NA 0 NA 0 0 0 NA NA NA NA ...
# $ hibp21????? : int? NA 0 NA 0 0 0 NA 0 NA NA ...

BP.stack2<-
 reshape(BP_2b,sep="",timevar= 
"time",direction="long",varying=list(names(BP_2b[8:9]),names(BP_2b[10:11]),names(BP_2b[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")
?identical(BP.stack1,BP.stack2)
#[1] FALSE

library(car)
BP.stack2$time <- recode(BP.stack2$time,("1=14;2=21")) 
head(BP.stack2,2)
#??? CODEA Sex MaternalAge Education Birthplace AggScore IntScore time Obese
#1.1???? 1? NA?????????? 3???????? 4????????? 1?????? NA?????? NA?? 14??? NA
#3.1???? 3?? 2?????????? 3???????? 3????????? 1??????? 0??????? 0?? 14???? 0
#??? Overweight HiBP
#1.1???????? NA?? NA
#3.1????????? 0??? 0
?tail(BP.stack2,2)
#?????? CODEA Sex MaternalAge Education Birthplace AggScore IntScore time Obese
#8555.2? 8555?? 1?????????? 3???????? 6????????? 2??????? 0??????? 0?? 21??? NA
#8556.2? 8556?? 1?????????? 3???????? 4????????? 1??????? 0??????? 0?? 21???? 0
#?????? Overweight HiBP
#8555.2???????? NA?? NA
#8556.2????????? 0?? NA
nrow(BP.stack2)
#[1] 13796
?length(BP.stack2$time[BP.stack2$time==14])
#[1] 6898
?length(BP.stack2$time[BP.stack2$time==21])
#[1] 6898

#or
names(BP_2b)[grep("\\d+",names(BP_2b))]<-gsub("(\\D+)(\\d+)","\\1_\\2",names(BP_2b)[grep("\\d+",names(BP_2b))])
BP.stack3<-reshape(BP_2b,dir="long",varying=8:13,sep="_")
?head(BP.stack3,2)
#???? CODEA Sex MaternalAge Education Birthplace AggScore IntScore time Obese
#1.14???? 1? NA?????????? 3???????? 4????????? 1?????? NA?????? NA?? 14??? NA
#2.14???? 3?? 2?????????? 3???????? 3????????? 1??????? 0??????? 0?? 14???? 0
#???? Overweight hibp id
#1.14???????? NA?? NA? 1
#2.14????????? 0??? 0? 2
?tail(BP.stack3,2)
#??????? CODEA Sex MaternalAge Education Birthplace AggScore IntScore time Obese
#6897.21? 8555?? 1?????????? 3???????? 6????????? 2??????? 0??????? 0?? 21??? NA
#6898.21? 8556?? 1?????????? 3???????? 4????????? 1??????? 0??????? 0?? 21???? 0
#??????? Overweight hibp?? id
#6897.21???????? NA?? NA 6897
#6898.21????????? 0?? NA 6898
?nrow(BP.stack3)
#[1] 13796
?length(BP.stack3$time[BP.stack3$time==21])
#[1] 6898
?length(BP.stack3$time[BP.stack3$time==14])
#[1] 6898

#So, I guess this solves the problem.? Regarding your second question, 
"Do children who are obese or overweight at age 14 experience different 
change in blood pressure by 21 years, compared to those with normal 
weight at age 14?"

In
 the Obese or Overweight columns, I am not sure what "0" means.? For 
example, in the overweight column, does "0" means it is normal, or it 
has to be both "0" for overweight and obese for a particular ID
(CODEA)
in each of the age groups?? I guess it should be the latter.? If that is
 the case, subset data in to normal, Obese, Overweight and then do the 
comparisons.
For example:
?BP.stacknormal<-subset(BP.stack3,Obese==0 & Overweight==0)
?nrow(BP.stacknormal)
[1] 4371
?head(BP.stacknormal,3)
#???? CODEA Sex MaternalAge Education Birthplace AggScore IntScore time Obese
#2.14???? 3?? 2?????????? 3???????? 3????????? 1??????? 0??????? 0?? 14???? 0
#4.14???? 7?? 2?????????? 4???????? 6????????? 1??????? 0??????? 0?? 14???? 0
#5.14???? 8?? 2?????????? 4???????? 4????????? 1??????? 0??????? 0?? 14???? 0
? # ? Overweight hibp id
#2.14????????? 0??? 0? 2
#4.14????????? 0??? 0? 4
#5.14????????? 0??? 0? 5

Similarly, you need to subset for Obese==1 , Overweight==1
BP.stackObese <-subset(BP.stack3,Obese==1)
?nrow(BP.stackObese)
#[1] 530

Regarding the analysis, I think logistic regression should fit in this case
because the response variable (hibp) is binary.
#Just a simple logistic regression
BP.stacknormal$Categ<-"Normal"
?BP.stackObese$Categ<-"Obese"
?BP.newObeseNormal<-rbind(BP.stacknormal,BP.stackObese)
BP.newObeseNormal$time<-factor(BP.newObeseNormal$time)
BP.newObeseNormal$Categ<- factor(BP.newObeseNormal$Categ)


BPlogit<-glm(hibp~time+Categ,data=BP.newObeseNormal,family="binomial")
#or?
BPlogit<-glm(hibp~time+Categ,data=BP.newObeseNormal,family=binomial(logit))

?summary(BPlogit)
#
#Call:
#glm(formula = hibp ~ time + Categ, family = "binomial", data =
BP.newObeseNormal)
#
#Deviance Residuals: 
?# ? Min?????? 1Q?? Median?????? 3Q????? Max? 
#-0.8630? -0.5452? -0.5452? -0.4965?? 2.0759? 

#Coefficients:
?# ????????? Estimate Std. Error z value Pr(>|z|)??? 
#(Intercept) -1.83099??? 0.05768 -31.745?? <2e-16 ***
#time21????? -0.20038??? 0.09290? -2.157??? 0.031 *? 
#CategObese?? 1.03506??? 0.12046?? 8.593?? <2e-16 ***
#---
#Signif. codes:? 0 ?***? 0.001 ?**? 0.01 ?*? 0.05 ?.? 0.1 ? ? 1 

For
 your question, I guess you need to add interaction term also in the 
model.? I am not sure whether you need random effects in the model.? If 
that is the case, you need ?lmer() from library(lme4). You could also 
post the question in R mixed models (r-sig-mixed-models at r-project.org)
mailing list.
A.K.




----- Original Message -----
From: usha2013 <usha.nathan at gmail.com>
To: r-help at r-project.org
Cc: 
Sent: Friday, December 28, 2012 2:02 AM
Subject: Re: [R] help with reshaping wide to long format

Hi, Sorry, but how did you bring it out?

Thanks

On Fri, Dec 28, 2012 at 8:48 AM, arun kirshna [via R] <
ml-node+s789695n4654093h10 at n4.nabble.com> wrote:
> Hi,
> bp.sub<- structure(list(CODEA = c(1L, 3L, 4L, 7L, 8L, 9L, 10L, 11L, 12L,
> 13L, 14L, 16L, 17L), C45 = c(NA, 2L, 2L, 2L, 2L, 1L, NA, 1L,
> 1L, 2L, 1L, 2L, 1L), ragek = c(3L, 3L, 3L, 4L, 4L, 3L, 3L, 3L,
> 3L, 3L, 3L, 3L, 3L), ra80 = c(4L, 3L, 6L, 6L, 4L, 6L, 3L, 4L,
> 4L, 4L, 4L, 4L, 4L), ra98 = c(1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L,
> 2L, 2L, 2L, 3L, 1L), CBCLAggressionAt1410 = c(NA, 0L, NA, 0L,
> 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), CBCLInternalisingAt1410 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Obese14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Obese21 = c(NA,
> 0L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Overweight14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Overweight21 = c(NA,
> 1L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 1L, 0L, NA), hibp14 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 1L, 1L, NA), hibp21 = c(NA,
> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 1L, NA, NA)), .Names =
c("CODEA",
> "C45", "ragek", "ra80", "ra98",
"CBCLAggressionAt1410",
> "CBCLInternalisingAt1410",
> "Obese14", "Obese21", "Overweight14",
"Overweight21", "hibp14",
> "hibp21"), row.names = c(NA, 13L), class =
"data.frame")
>
> BP.stack1<- reshape(bp.sub,sep="",timevar>
"time",direction="long",varying=list(names(bp.sub[8:9]),names(bp.sub[10:11]),names(bp.sub[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")
>
> BP.stack1$time <- recode(BP.stack1$time,("1=14;2=21"))
>? BP.stack1
>? #? ? CODEA C45 ragek ra80 ra98 CBCLAggressionAt1410
> CBCLInternalisingAt1410
> #1.1? ? ? 1? NA? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #3.1? ? ? 3?  2? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #4.1? ? ? 4?  2? ?  3? ? 6? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #7.1? ? ? 7?  2? ?  4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #8.1? ? ? 8?  2? ?  4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #9.1? ? ? 9?  1? ?  3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #10.1? ? 10? NA? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #11.1? ? 11?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #12.1? ? 12?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #13.1? ? 13?  2? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #14.1? ? 14?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #16.1? ? 16?  2? ?  3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
> 0
> #17.1? ? 17?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #1.2? ? ? 1? NA? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #3.2? ? ? 3?  2? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #4.2? ? ? 4?  2? ?  3? ? 6? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #7.2? ? ? 7?  2? ?  4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #8.2? ? ? 8?  2? ?  4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #9.2? ? ? 9?  1? ?  3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #10.2? ? 10? NA? ?  3? ? 3? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
> #11.2? ? 11?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
> 0
> #12.2? ? 12?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #13.2? ? 13?  2? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ?  NA
>? NA
> #14.2? ? 14?  1? ?  3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
> 0
> #16.2? ? 16?  2? ?  3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
> 0
> #17.2? ? 17?  1? ?  3? ? 4? ? 1? ? ? ? ? ? ? ? ?  NA
>? NA
>?  #?  time Obese Overweight HiBP
> #1.1? ? 14? ? NA? ? ? ?  NA?  NA
> #3.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #4.1? ? 14? ? NA? ? ? ?  NA?  NA
> #7.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #8.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #9.1? ? 14? ?  0? ? ? ? ? 0? ? 0
> #10.1?  14? ? NA? ? ? ?  NA?  NA
> #11.1?  14? ? NA? ? ? ?  NA?  NA
> #2.1?  14? ? NA? ? ? ?  NA?  NA
> #13.1?  14? ? NA? ? ? ?  NA?  NA
> #14.1?  14? ?  0? ? ? ? ? 0? ? 1
> #16.1?  14? ?  0? ? ? ? ? 0? ? 1
> #17.1?  14? ? NA? ? ? ?  NA?  NA
> #1.2? ? 21? ? NA? ? ? ?  NA?  NA
> #3.2? ? 21? ?  0? ? ? ? ? 1? ? 0
> #4.2? ? 21? ? NA? ? ? ?  NA?  NA
> #7.2? ? 21? ?  1? ? ? ? ? 1? ? 0
> #8.2? ? 21? ?  0? ? ? ? ? 0? ? 0
> #9.2? ? 21? ?  0? ? ? ? ? 0? ? 0
> #10.2?  21? ? NA? ? ? ?  NA?  NA
> #11.2?  21? ?  0? ? ? ? ? 0? ? 0
> #12.2?  21? ? NA? ? ? ?  NA?  NA
> #13.2?  21? ? NA? ? ? ?  NA?  NA
> #14.2?  21? ?  0? ? ? ? ? 1? ? 1
> #16.2?  21? ?  0? ? ? ? ? 0?  NA
> #17.2?  21? ? NA? ? ? ?  NA?  NA
>
names(bp.sub)[grep("\\d+",names(bp.sub))]<-gsub("(\\D+)(\\d+)","\\1_\\2",names(bp.sub)[grep("\\d+",names(bp.sub))])
>
>?
BP.stack2<-reshape(bp.sub,dir="long",varying=8:13,sep="_")
>? Bp.stack2
>? ? ?  CODEA C_45 ragek ra_80 ra_98 CBCLAggressionAt_1410
> 1.14? ? ? 1?  NA? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 2.14? ? ? 3? ? 2? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ?  0
> 3.14? ? ? 4? ? 2? ?  3? ?  6? ?  1? ? ? ? ? ? ? ? ? ? NA
> 4.14? ? ? 7? ? 2? ?  4? ?  6? ?  1? ? ? ? ? ? ? ? ? ?  0
> 5.14? ? ? 8? ? 2? ?  4? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 6.14? ? ? 9? ? 1? ?  3? ?  6? ?  2? ? ? ? ? ? ? ? ? ?  0
> 7.14? ?  10?  NA? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ? NA
> 8.14? ?  11? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 9.14? ?  12? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 10.14? ? 13? ? 2? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 11.14? ? 14? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ?  0
> 12.14? ? 16? ? 2? ?  3? ?  4? ?  3? ? ? ? ? ? ? ? ? ?  0
> 13.14? ? 17? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 1.21? ? ? 1?  NA? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
> 2.21? ? ? 3? ? 2? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ?  0
> 3.21? ? ? 4? ? 2? ?  3? ?  6? ?  1? ? ? ? ? ? ? ? ? ? NA
> 4.21? ? ? 7? ? 2? ?  4? ?  6? ?  1? ? ? ? ? ? ? ? ? ?  0
> 5.21? ? ? 8? ? 2? ?  4? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 6.21? ? ? 9? ? 1? ?  3? ?  6? ?  2? ? ? ? ? ? ? ? ? ?  0
> 7.21? ?  10?  NA? ?  3? ?  3? ?  1? ? ? ? ? ? ? ? ? ? NA
> 8.21? ?  11? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ?  0
> 9.21? ?  12? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 10.21? ? 13? ? 2? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ? NA
> 11.21? ? 14? ? 1? ?  3? ?  4? ?  2? ? ? ? ? ? ? ? ? ?  0
> 12.21? ? 16? ? 2? ?  3? ?  4? ?  3? ? ? ? ? ? ? ? ? ?  0
> 13.21? ? 17? ? 1? ?  3? ?  4? ?  1? ? ? ? ? ? ? ? ? ? NA
>? ? ?  CBCLInternalisingAt_1410 time Obese Overweight hibp id
> 1.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 1
> 2.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 2
> 3.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 3
> 4.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 4
> 5.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 5
> 6.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ?  0? ? ? ? ? 0? ? 0? 6
> 7.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 7
> 8.14? ? ? ? ? ? ? ? ? ? ? ?  0?  14? ? NA? ? ? ?  NA?  NA? 8
> 9.14? ? ? ? ? ? ? ? ? ? ? ? NA?  14? ? NA? ? ? ?  NA?  NA? 9
> 10.14? ? ? ? ? ? ? ? ? ? ?  NA?  14? ? NA? ? ? ?  NA?  NA 10
> 11.14? ? ? ? ? ? ? ? ? ? ? ? 0?  14? ?  0? ? ? ? ? 0? ? 1 11
> 12.14? ? ? ? ? ? ? ? ? ? ? ? 0?  14? ?  0? ? ? ? ? 0? ? 1 12
> 13.14? ? ? ? ? ? ? ? ? ? ?  NA?  14? ? NA? ? ? ?  NA?  NA 13
> 1.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 1
> 2.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 1? ? 0? 2
> 3.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 3
> 4.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  1? ? ? ? ? 1? ? 0? 4
> 5.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 5
> 6.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 6
> 7.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 7
> 8.21? ? ? ? ? ? ? ? ? ? ? ?  0?  21? ?  0? ? ? ? ? 0? ? 0? 8
> 9.21? ? ? ? ? ? ? ? ? ? ? ? NA?  21? ? NA? ? ? ?  NA?  NA? 9
> 10.21? ? ? ? ? ? ? ? ? ? ?  NA?  21? ? NA? ? ? ?  NA?  NA 10
> 11.21? ? ? ? ? ? ? ? ? ? ? ? 0?  21? ?  0? ? ? ? ? 1? ? 1 11
> 12.21? ? ? ? ? ? ? ? ? ? ? ? 0?  21? ?  0? ? ? ? ? 0?  NA 12
> 13.21? ? ? ? ? ? ? ? ? ? ?  NA?  21? ? NA? ? ? ?  NA?  NA 13
> A.K.
>
>
>
>
>
> ------------------------------
>? If you reply to this email, your message will be added to the discussion
> below:
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______________________________________________
R-help at r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

arun

2012-Dec-31 14:39 UTC

head link

[R] help with reshaping wide to long format

HI Usha,

For your first question (saw ur posting in Nabble).
I subset the data on the reshaped long format data which has time variable.?
Please check my previous email.
BP.stacknormal<-subset(BP.stack3,Obese==0 & Overweight==0) 
???????????????????????????????????????? ^^^^^^^
The variable "Categ" was created to identify the levels
"Normal", "Obese" in the reshaped data.? You should also
create "Overweight" just like I created the others and rbind the three
subsets.
I would do mixed effects model with all the three "Normal",
"Obese", "Overweight" in the same model as you wanted random
effects in the model.? Regarding the mixed effects model, it would be good to
post the question in R mixed models (r-sig-mixed-models at r-project.org)
mailing group as it specifically deals with this kind of problems.? I can't
say whether nlme or lme4 is better in this case.? You could fit the model with
several other variables and select the best model based on different criteria.
Happy New Year!
A.K.
?






________________________________
From: Usha Gurunathan <usha.nathan at gmail.com>
To: arun <smartpink111 at yahoo.com> 
Sent: Sunday, December 30, 2012 7:15 AM
Subject: Re: [R] help with reshaping wide to long format


Hi Arun

I have attached the data set .

The research question(one of them) I am trying to figure? a way out is:

Do children who are obese or overweight at age 14 experience different change in
blood pressure by 21 years, compared to those with normal weight at age 14?

Also a way to deal with huge no. of missing values?.

Sorry, the above is probably not to do with R programming. No obligations, you
dont have to answer them if you are not keen to.

Thanks, Usha




On Sun, Dec 30, 2012 at 1:22 AM, arun <smartpink111 at yahoo.com> wrote:

HI Usha,>How big is the original data?? YOu can check with (dim(Yourdata)).? If you
could email the dataset, I will look into it.? Also, check whether the format of
the data is correct for all the rows.? Sometimes, spaces could alter the columns
and create this kind of problems.?
>
>With regards to the comparison, I don't know the range of normal weight
for 21 yrs old.? I would assume it depends upon height, sex, BMI etc.? In the
subset data you sent to me, there were no columns with height, sex, or BMI.? If
it had, then you may use ?sample() with ranges of weight for each of the
combinations of categories (height, sex, BMI).? In this case, with very options,
I am not sure about the right way to proceed.
>Arun ? ? ?
>
>
>
>
>
>
>
>
>
>________________________________
>From: Usha Gurunathan <usha.nathan at gmail.com>
>To: arun <smartpink111 at yahoo.com>
>Sent: Saturday, December 29, 2012 7:36 AM
>
>Subject: Re: [R] help with reshaping wide to long format
>
>
>Hi
>
>I am able to get the output with the subset showing the two time periods ..
With my master data, I cannot see the time=2 ( same code , just replaced the
data frame.). May be thats the max. it could print.? Any way, I cross checked
few random numbers in the wide and long format ,they tally.? Many thanks for
your time and patience.
>
>With the same data, if I have to compare the change in blood pressure by 21
yrs between obese/overweight 14 versus normal weight at 14 (there is no normal
weight group in the data), is there any way that I can produce a normal weight
group?
>
>Any help would be appreciated.
>
>Usha
>
>
>
>
>On Fri, Dec 28, 2012 at 11:23 PM, arun <smartpink111 at yahoo.com>
wrote:
>
>Hi,
>>DId you tried "copy and paste" the code in my reply?? If not,
please do.?
>>
>>In your previous replies, you forgot to close the?
bracket(")") or adding "#" in between the codes.? Please
check your codes.
>>
>>It would be also helpful to read the posting guide
(http://www.r-project.org/posting-guide.html) and "An introduction to
R" (the link will be in the posting guide).
>>
>>A.K.
>>
>>
>>
>>
>>
>>----- Original Message -----
>>From: usha2013 <usha.nathan at gmail.com>
>>To: r-help at r-project.org
>>Cc:
>>Sent: Friday, December 28, 2012 2:02 AM
>>Subject: Re: [R] help with reshaping wide to long format
>>
>>Hi, Sorry, but how did you bring it out?
>>
>>Thanks
>>
>>On Fri, Dec 28, 2012 at 8:48 AM, arun kirshna [via R] <
>>ml-node+s789695n4654093h10 at n4.nabble.com> wrote:
>>
>>> Hi,
>>> bp.sub<- structure(list(CODEA = c(1L, 3L, 4L, 7L, 8L, 9L, 10L,
11L, 12L,
>>> 13L, 14L, 16L, 17L), C45 = c(NA, 2L, 2L, 2L, 2L, 1L, NA, 1L,
>>> 1L, 2L, 1L, 2L, 1L), ragek = c(3L, 3L, 3L, 4L, 4L, 3L, 3L, 3L,
>>> 3L, 3L, 3L, 3L, 3L), ra80 = c(4L, 3L, 6L, 6L, 4L, 6L, 3L, 4L,
>>> 4L, 4L, 4L, 4L, 4L), ra98 = c(1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L,
>>> 2L, 2L, 2L, 3L, 1L), CBCLAggressionAt1410 = c(NA, 0L, NA, 0L,
>>> 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), CBCLInternalisingAt1410 =
c(NA,
>>> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Obese14 = c(NA,
>>> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Obese21 = c(NA,
>>> 0L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 0L, 0L, NA), Overweight14 =
c(NA,
>>> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 0L, 0L, NA), Overweight21 =
c(NA,
>>> 1L, NA, 1L, 0L, 0L, NA, 0L, NA, NA, 1L, 0L, NA), hibp14 = c(NA,
>>> 0L, NA, 0L, 0L, 0L, NA, NA, NA, NA, 1L, 1L, NA), hibp21 = c(NA,
>>> 0L, NA, 0L, 0L, 0L, NA, 0L, NA, NA, 1L, NA, NA)), .Names =
c("CODEA",
>>> "C45", "ragek", "ra80",
"ra98", "CBCLAggressionAt1410",
>>> "CBCLInternalisingAt1410",
>>> "Obese14", "Obese21", "Overweight14",
"Overweight21", "hibp14",
>>> "hibp21"), row.names = c(NA, 13L), class =
"data.frame")
>>>
>>> BP.stack1<- reshape(bp.sub,sep="",timevar>>>
"time",direction="long",varying=list(names(bp.sub[8:9]),names(bp.sub[10:11]),names(bp.sub[12:13])),v.names=c("Obese","Overweight","HiBP"),idvar="CODEA")
>>>
>>> BP.stack1$time <- recode(BP.stack1$time,("1=14;2=21"))
>>>? BP.stack1
>>>? #? ? CODEA C45 ragek ra80 ra98 CBCLAggressionAt1410
>>> CBCLInternalisingAt1410
>>> #1.1? ? ? 1? NA? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #3.1? ? ? 3? ?2? ? ?3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #4.1? ? ? 4? ?2? ? ?3? ? 6? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #7.1? ? ? 7? ?2? ? ?4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #8.1? ? ? 8? ?2? ? ?4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #9.1? ? ? 9? ?1? ? ?3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #10.1? ? 10? NA? ? ?3? ? 3? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #11.1? ? 11? ?1? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #12.1? ? 12? ?1? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #13.1? ? 13? ?2? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #14.1? ? 14? ?1? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #16.1? ? 16? ?2? ? ?3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #17.1? ? 17? ?1? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #1.2? ? ? 1? NA? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #3.2? ? ? 3? ?2? ? ?3? ? 3? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #4.2? ? ? 4? ?2? ? ?3? ? 6? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #7.2? ? ? 7? ?2? ? ?4? ? 6? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #8.2? ? ? 8? ?2? ? ?4? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #9.2? ? ? 9? ?1? ? ?3? ? 6? ? 2? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #10.2? ? 10? NA? ? ?3? ? 3? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #11.2? ? 11? ?1? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #12.2? ? 12? ?1? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #13.2? ? 13? ?2? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>> #14.2? ? 14? ?1? ? ?3? ? 4? ? 2? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #16.2? ? 16? ?2? ? ?3? ? 4? ? 3? ? ? ? ? ? ? ? ? ? 0
>>> 0
>>> #17.2? ? 17? ?1? ? ?3? ? 4? ? 1? ? ? ? ? ? ? ? ? ?NA
>>>? NA
>>>? ?#? ?time Obese Overweight HiBP
>>> #1.1? ? 14? ? NA? ? ? ? ?NA? ?NA
>>> #3.1? ? 14? ? ?0? ? ? ? ? 0? ? 0
>>> #4.1? ? 14? ? NA? ? ? ? ?NA? ?NA
>>> #7.1? ? 14? ? ?0? ? ? ? ? 0? ? 0
>>> #8.1? ? 14? ? ?0? ? ? ? ? 0? ? 0
>>> #9.1? ? 14? ? ?0? ? ? ? ? 0? ? 0
>>> #10.1? ?14? ? NA? ? ? ? ?NA? ?NA
>>> #11.1? ?14? ? NA? ? ? ? ?NA? ?NA
>>> #2.1? ?14? ? NA? ? ? ? ?NA? ?NA
>>> #13.1? ?14? ? NA? ? ? ? ?NA? ?NA
>>> #14.1? ?14? ? ?0? ? ? ? ? 0? ? 1
>>> #16.1? ?14? ? ?0? ? ? ? ? 0? ? 1
>>> #17.1? ?14? ? NA? ? ? ? ?NA? ?NA
>>> #1.2? ? 21? ? NA? ? ? ? ?NA? ?NA
>>> #3.2? ? 21? ? ?0? ? ? ? ? 1? ? 0
>>> #4.2? ? 21? ? NA? ? ? ? ?NA? ?NA
>>> #7.2? ? 21? ? ?1? ? ? ? ? 1? ? 0
>>> #8.2? ? 21? ? ?0? ? ? ? ? 0? ? 0
>>> #9.2? ? 21? ? ?0? ? ? ? ? 0? ? 0
>>> #10.2? ?21? ? NA? ? ? ? ?NA? ?NA
>>> #11.2? ?21? ? ?0? ? ? ? ? 0? ? 0
>>> #12.2? ?21? ? NA? ? ? ? ?NA? ?NA
>>> #13.2? ?21? ? NA? ? ? ? ?NA? ?NA
>>> #14.2? ?21? ? ?0? ? ? ? ? 1? ? 1
>>> #16.2? ?21? ? ?0? ? ? ? ? 0? ?NA
>>> #17.2? ?21? ? NA? ? ? ? ?NA? ?NA
>>>
names(bp.sub)[grep("\\d+",names(bp.sub))]<-gsub("(\\D+)(\\d+)","\\1_\\2",names(bp.sub)[grep("\\d+",names(bp.sub))])
>>>
>>>?
BP.stack2<-reshape(bp.sub,dir="long",varying=8:13,sep="_")
>>>? Bp.stack2
>>>? ? ? ?CODEA C_45 ragek ra_80 ra_98 CBCLAggressionAt_1410
>>> 1.14? ? ? 1? ?NA? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 2.14? ? ? 3? ? 2? ? ?3? ? ?3? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 3.14? ? ? 4? ? 2? ? ?3? ? ?6? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 4.14? ? ? 7? ? 2? ? ?4? ? ?6? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 5.14? ? ? 8? ? 2? ? ?4? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 6.14? ? ? 9? ? 1? ? ?3? ? ?6? ? ?2? ? ? ? ? ? ? ? ? ? ?0
>>> 7.14? ? ?10? ?NA? ? ?3? ? ?3? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 8.14? ? ?11? ? 1? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 9.14? ? ?12? ? 1? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? NA
>>> 10.14? ? 13? ? 2? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? NA
>>> 11.14? ? 14? ? 1? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? ?0
>>> 12.14? ? 16? ? 2? ? ?3? ? ?4? ? ?3? ? ? ? ? ? ? ? ? ? ?0
>>> 13.14? ? 17? ? 1? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 1.21? ? ? 1? ?NA? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 2.21? ? ? 3? ? 2? ? ?3? ? ?3? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 3.21? ? ? 4? ? 2? ? ?3? ? ?6? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 4.21? ? ? 7? ? 2? ? ?4? ? ?6? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 5.21? ? ? 8? ? 2? ? ?4? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 6.21? ? ? 9? ? 1? ? ?3? ? ?6? ? ?2? ? ? ? ? ? ? ? ? ? ?0
>>> 7.21? ? ?10? ?NA? ? ?3? ? ?3? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>> 8.21? ? ?11? ? 1? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? ?0
>>> 9.21? ? ?12? ? 1? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? NA
>>> 10.21? ? 13? ? 2? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? NA
>>> 11.21? ? 14? ? 1? ? ?3? ? ?4? ? ?2? ? ? ? ? ? ? ? ? ? ?0
>>> 12.21? ? 16? ? 2? ? ?3? ? ?4? ? ?3? ? ? ? ? ? ? ? ? ? ?0
>>> 13.21? ? 17? ? 1? ? ?3? ? ?4? ? ?1? ? ? ? ? ? ? ? ? ? NA
>>>? ? ? ?CBCLInternalisingAt_1410 time Obese Overweight hibp id
>>> 1.14? ? ? ? ? ? ? ? ? ? ? ? NA? ?14? ? NA? ? ? ? ?NA? ?NA? 1
>>> 2.14? ? ? ? ? ? ? ? ? ? ? ? ?0? ?14? ? ?0? ? ? ? ? 0? ? 0? 2
>>> 3.14? ? ? ? ? ? ? ? ? ? ? ? NA? ?14? ? NA? ? ? ? ?NA? ?NA? 3
>>> 4.14? ? ? ? ? ? ? ? ? ? ? ? ?0? ?14? ? ?0? ? ? ? ? 0? ? 0? 4
>>> 5.14? ? ? ? ? ? ? ? ? ? ? ? ?0? ?14? ? ?0? ? ? ? ? 0? ? 0? 5
>>> 6.14? ? ? ? ? ? ? ? ? ? ? ? ?0? ?14? ? ?0? ? ? ? ? 0? ? 0? 6
>>> 7.14? ? ? ? ? ? ? ? ? ? ? ? NA? ?14? ? NA? ? ? ? ?NA? ?NA? 7
>>> 8.14? ? ? ? ? ? ? ? ? ? ? ? ?0? ?14? ? NA? ? ? ? ?NA? ?NA? 8
>>> 9.14? ? ? ? ? ? ? ? ? ? ? ? NA? ?14? ? NA? ? ? ? ?NA? ?NA? 9
>>> 10.14? ? ? ? ? ? ? ? ? ? ? ?NA? ?14? ? NA? ? ? ? ?NA? ?NA 10
>>> 11.14? ? ? ? ? ? ? ? ? ? ? ? 0? ?14? ? ?0? ? ? ? ? 0? ? 1 11
>>> 12.14? ? ? ? ? ? ? ? ? ? ? ? 0? ?14? ? ?0? ? ? ? ? 0? ? 1 12
>>> 13.14? ? ? ? ? ? ? ? ? ? ? ?NA? ?14? ? NA? ? ? ? ?NA? ?NA 13
>>> 1.21? ? ? ? ? ? ? ? ? ? ? ? NA? ?21? ? NA? ? ? ? ?NA? ?NA? 1
>>> 2.21? ? ? ? ? ? ? ? ? ? ? ? ?0? ?21? ? ?0? ? ? ? ? 1? ? 0? 2
>>> 3.21? ? ? ? ? ? ? ? ? ? ? ? NA? ?21? ? NA? ? ? ? ?NA? ?NA? 3
>>> 4.21? ? ? ? ? ? ? ? ? ? ? ? ?0? ?21? ? ?1? ? ? ? ? 1? ? 0? 4
>>> 5.21? ? ? ? ? ? ? ? ? ? ? ? ?0? ?21? ? ?0? ? ? ? ? 0? ? 0? 5
>>> 6.21? ? ? ? ? ? ? ? ? ? ? ? ?0? ?21? ? ?0? ? ? ? ? 0? ? 0? 6
>>> 7.21? ? ? ? ? ? ? ? ? ? ? ? NA? ?21? ? NA? ? ? ? ?NA? ?NA? 7
>>> 8.21? ? ? ? ? ? ? ? ? ? ? ? ?0? ?21? ? ?0? ? ? ? ? 0? ? 0? 8
>>> 9.21? ? ? ? ? ? ? ? ? ? ? ? NA? ?21? ? NA? ? ? ? ?NA? ?NA? 9
>>> 10.21? ? ? ? ? ? ? ? ? ? ? ?NA? ?21? ? NA? ? ? ? ?NA? ?NA 10
>>> 11.21? ? ? ? ? ? ? ? ? ? ? ? 0? ?21? ? ?0? ? ? ? ? 1? ? 1 11
>>> 12.21? ? ? ? ? ? ? ? ? ? ? ? 0? ?21? ? ?0? ? ? ? ? 0? ?NA 12
>>> 13.21? ? ? ? ? ? ? ? ? ? ? ?NA? ?21? ? NA? ? ? ? ?NA? ?NA 13
>>> A.K.
>>>
>>>
>>>
>>>
>>>
>>> ------------------------------
>>
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>>View this message in context:
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>>??? [[alternative HTML version deleted]]
>>
>>______________________________________________
>>R-help at r-project.org mailing list
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
>>and provide commented, minimal, self-contained, reproducible code.
>>
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