Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit)[root@localhost ~]# mpich2version> MPICH2 Version: 1.4.1p1 > MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011 > MPICH2 Device: ch3:nemesis > MPICH2 configure: > MPICH2 CC: gcc -O2 > MPICH2 CXX: c++ -O2 > MPICH2 F77: gfortran -O2 > MPICH2 FC: f95 -O2when i issue the install order i get this output:> install.packages("Rmpi") > Installing package(s) into ‘/usr/lib64/R/library’ > (as ‘lib’ is unspecified) > trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz' > Content type 'application/x-gzip' length 92977 bytes (90 Kb) > opened URL > =================================================> downloaded 90 Kb > * installing *source* package ‘Rmpi’ ... > ** package ‘Rmpi’ successfully unpacked and MD5 sums checked > checking for gcc... gcc -m64 -std=gnu99 > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc -m64 -std=gnu99 accepts -g... yes > checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed > I am here /usr/local and it is OpenMPI > Trying to find mpi.h ... > Found in /usr/local/include > Trying to find libmpi.so or libmpich.a ... > checking for main in -lmpi... no > libmpi not found. exiting... > ERROR: configuration failed for package ‘Rmpi’ > * removing ‘/usr/lib64/R/library/Rmpi’ > The downloaded source packages are in > ‘/tmp/RtmpBvTTqc/downloaded_packages’ > Updating HTML index of packages in '.Library' > Making packages.html ... done > Warning message: > In install.packages("Rmpi") : > installation of package ‘Rmpi’ had non-zero exit statusI have tried with different configure.args but the result is the same, i cant seem to install it... Is there someone who has been through the same problem? or that knows a guide i can follow or something? Thanks in advance Ricardo [[alternative HTML version deleted]]
Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit)[root@localhost ~]# mpich2version> MPICH2 Version: 1.4.1p1 > MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011 > MPICH2 Device: ch3:nemesis > MPICH2 configure: > MPICH2 CC: gcc -O2 > MPICH2 CXX: c++ -O2 > MPICH2 F77: gfortran -O2 > MPICH2 FC: f95 -O2when i issue the install order i get this output:> install.packages("Rmpi") > Installing package(s) into ‘/usr/lib64/R/library’ > (as ‘lib’ is unspecified) > trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz' > Content type 'application/x-gzip' length 92977 bytes (90 Kb) > opened URL > =================================================> downloaded 90 Kb > * installing *source* package ‘Rmpi’ ... > ** package ‘Rmpi’ successfully unpacked and MD5 sums checked > checking for gcc... gcc -m64 -std=gnu99 > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc -m64 -std=gnu99 accepts -g... yes > checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed > I am here /usr/local and it is OpenMPI > Trying to find mpi.h ... > Found in /usr/local/include > Trying to find libmpi.so or libmpich.a ... > checking for main in -lmpi... no > libmpi not found. exiting... > ERROR: configuration failed for package ‘Rmpi’ > * removing ‘/usr/lib64/R/library/Rmpi’ > The downloaded source packages are in > ‘/tmp/RtmpBvTTqc/downloaded_packages’ > Updating HTML index of packages in '.Library' > Making packages.html ... done > Warning message: > In install.packages("Rmpi") : > installation of package ‘Rmpi’ had non-zero exit statusI have tried with different configure.args but the result is the same, i cant seem to install it... Is there someone who has been through the same problem? or that knows a guide i can follow or something? Thanks in advance Ricardo [[alternative HTML version deleted]]
On Nov 21, 2012, at 10:40 AM, Ricardo Rom?n Brenes <rroman at cenat.ac.cr> wrote:> Hello everyone > > im trying to install Rmpi library on centos 6. I have already installed > mpich2 1.4 > > [root at localhost ~]# R --version >> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" >> Copyright (C) 2012 The R Foundation for Statistical Computing >> ISBN 3-900051-07-0 >> Platform: x86_64-redhat-linux-gnu (64-bit) > > > > [root at localhost ~]# mpich2version >> MPICH2 Version: 1.4.1p1 >> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011 >> MPICH2 Device: ch3:nemesis >> MPICH2 configure: >> MPICH2 CC: gcc -O2 >> MPICH2 CXX: c++ -O2 >> MPICH2 F77: gfortran -O2 >> MPICH2 FC: f95 -O2 > > > > > when i issue the install order i get this output: > > >> install.packages("Rmpi") >> Installing package(s) into ?/usr/lib64/R/library? >> (as ?lib? is unspecified) >> trying URL 'http://cran.rstudio.com/src/contrib/Rmpi_0.6-1.tar.gz' >> Content type 'application/x-gzip' length 92977 bytes (90 Kb) >> opened URL >> =================================================>> downloaded 90 Kb >> * installing *source* package ?Rmpi? ... >> ** package ?Rmpi? successfully unpacked and MD5 sums checked >> checking for gcc... gcc -m64 -std=gnu99 >> checking whether the C compiler works... yes >> checking for C compiler default output file name... a.out >> checking for suffix of executables... >> checking whether we are cross compiling... no >> checking for suffix of object files... o >> checking whether we are using the GNU C compiler... yes >> checking whether gcc -m64 -std=gnu99 accepts -g... yes >> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed >> I am here /usr/local and it is OpenMPI >> Trying to find mpi.h ... >> Found in /usr/local/include >> Trying to find libmpi.so or libmpich.a ... >> checking for main in -lmpi... no >> libmpi not found. exiting... >> ERROR: configuration failed for package ?Rmpi? >> * removing ?/usr/lib64/R/library/Rmpi? >> The downloaded source packages are in >> ?/tmp/RtmpBvTTqc/downloaded_packages? >> Updating HTML index of packages in '.Library' >> Making packages.html ... done >> Warning message: >> In install.packages("Rmpi") : >> installation of package ?Rmpi? had non-zero exit status > > > > I have tried with different configure.args but the result is the same, i > cant seem to install it... > > Is there someone who has been through the same problem? or that knows a > guide i can follow or something? > > Thanks in advance > > RicardoThere is a page here: http://www.stats.uwo.ca/faculty/yu/Rmpi/ which is linked from the CRAN page for the package. On the above page, there is an Installation for Linux link, which is likely to be helpful. Regards, Marc Schwartz