search for: mpich2

...39;s what it says: ===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package mpich2.x86_64 0:1.2.1-2.3.el6 will be obsoleted --> Processing Dependency: libmpich.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: libmpichf90.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: mpich2 for pa...

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Ver...

Hi, everyone, I want to install Rmpi on a cluster with Fedora linux. It already installed mpich2, but not lam-mpi. I installed R-2.2.0 on it already. And I got error as below: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we...

...8.el6.i686.rpm 733adb4fe55eda57f4d1bee57c78b5705d3d5341c7fe729005c615cb626df2cb boost-filesystem-1.41.0-18.el6.i686.rpm aee63071a28d0ecd5432bd041ca2711dc8e2185785eb47cebec69907212d9801 boost-graph-1.41.0-18.el6.i686.rpm f115d575b4b0f0bb5e75aee5fa87feef975c59ee13e645bc3d1c05363da440eb boost-graph-mpich2-1.41.0-18.el6.i686.rpm a2289f4ef3d7af0dd747fbfa8b34b4cd06854b4c3acf9349c8eb2098aeb3e792 boost-graph-openmpi-1.41.0-18.el6.i686.rpm bf912b0ec04ce5b9a7a2c478d43163c812c69962aec063d5a6b31425dd2ecaa8 boost-iostreams-1.41.0-18.el6.i686.rpm d12b37f305bbfe563b1d2aa479234b91d9ad066bedba61fb842b3a3f61463b...

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently encountering the...

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently encountering the...

...8.el6.i686.rpm 733adb4fe55eda57f4d1bee57c78b5705d3d5341c7fe729005c615cb626df2cb boost-filesystem-1.41.0-18.el6.i686.rpm aee63071a28d0ecd5432bd041ca2711dc8e2185785eb47cebec69907212d9801 boost-graph-1.41.0-18.el6.i686.rpm f115d575b4b0f0bb5e75aee5fa87feef975c59ee13e645bc3d1c05363da440eb boost-graph-mpich2-1.41.0-18.el6.i686.rpm a2289f4ef3d7af0dd747fbfa8b34b4cd06854b4c3acf9349c8eb2098aeb3e792 boost-graph-openmpi-1.41.0-18.el6.i686.rpm bf912b0ec04ce5b9a7a2c478d43163c812c69962aec063d5a6b31425dd2ecaa8 boost-iostreams-1.41.0-18.el6.i686.rpm d12b37f305bbfe563b1d2aa479234b91d9ad066bedba61fb842b3a3f61463b...

I''m running puppetd as root and I''m trying to execute tar as the "puppetd" user 59 define untar ( $source, $dest, $creates, $user = "puppetd" ) { 60 exec { "tar -xzf $source" : 61 cwd => $dest, 62 path => "/bin:/usr/bin", 63 user => $user, 64 creates => $creates,

...4.i686.rpm b920ba04e5ade12575ba655357a0d0b720347a594b991da83dbe331af3fc45ce boost-filesystem-1.41.0-15.el6_4.i686.rpm 52fb005e147b8056fb73433415ec6c81f00ca844615d0cf40f1134f312920334 boost-graph-1.41.0-15.el6_4.i686.rpm 9c849eef5a079e66a1793d2e0f4eabc499d883298a72055339aa32e989cdbf77 boost-graph-mpich2-1.41.0-15.el6_4.i686.rpm a581db0b2a482490e6f97662d5f0f9aae349db7ca4e1c6a77e84bb18b1bf3289 boost-graph-openmpi-1.41.0-15.el6_4.i686.rpm 97ed66a4780a9d3a5dd79d8df3bde341f9affbf2eac25e568cf7b28e5e1c9e8b boost-iostreams-1.41.0-15.el6_4.i686.rpm f2aeff031b689dd42236c8cd886f6ef86d73b3de8fc2b94070468869...

...h two laptops. I thought that the package snow would come handy in this situation, but to use snow, I would probably need to install package Rmpi first. I might also like to use Rmpi directly. In order to use Rmpi in windows, I need to install MPI middle-ware, for which I have found two options: MPICH2: http://www.mcs.anl.gov/research/projects/mpich2/ DeinoMPI: http://mpi.deino.net/ First I tried MPICH2 1.06 + R-2.6.0 + Rmpi 0.5-5. (I downloaded windows binaries of Rmpi from Rmpi website :http://www.stats.uwo.ca/faculty/yu/Rmpi/) With MPICH2 I managed to connect my computers so that I was able...

Hi I have managed to install MPICH2 and Rmpi on my Windows 7 machine. I can also run the following code > library(Rmpi) > mpi.spawn.Rslaves() 4 slaves are spawned successfully. 0 failed. master (rank 0, comm 1) of size 5 is running on: MyMaster slave1 (rank 1, comm 1) of size 5 is running on: MyMaster slave2...

Hi I have managed to install MPICH2 and Rmpi on my Windows 7 machine. I can also run the following code > library(Rmpi) > mpi.spawn.Rslaves() 4 slaves are spawned successfully. 0 failed. master (rank 0, comm 1) of size 5 is running on: MyMaster slave1 (rank 1, comm 1) of size 5 is running on: MyMaster slave2 (rank 2,...

Hi, I have a query regarding Lustre Throughput Numbers with mdtest benchmark.I am running mdtest benhmark with following options :- /home/meshram/mpich2-new/mpich2-1.4/mpich2-install/bin/mpirun -np 256 -hostfile ./hostfile ./mdtest -z 3 -b 10 -I 5 -v -d /tmp/l66 where , mdtest - is the standard benchmark to test metadata operations. [ https://computing.llnl.gov/?set=code&page=sio_downloads ] /tmp/l66 is my Lustre mount. I am using 1Gige Netwo...

Hi, I have a query regarding Lustre Throughput Numbers with mdtest benchmark.I am running mdtest benhmark with following options :- /home/meshram/mpich2-new/mpich2-1.4/mpich2-install/bin/mpirun -np 256 -hostfile ./hostfile ./mdtest -z 3 -b 10 -I 5 -v -d /tmp/l66 where , mdtest - is the standard benchmark to test metadata operations. [ https://computing.llnl.gov/?set=code&page=sio_downloads ] /tmp/l66 is my Lustre mount. I am using 1Gige Netwo...

...4.i686.rpm 700eef24e99b84d1fcd43101bc45e5aa2c7c2addce1c0eb399fd28e533c6c61e boost-filesystem-1.41.0-17.el6_4.i686.rpm f2cc7bf10407da92c2f990ae939099b9abcdcca29816b176e8eca375a2c85fd5 boost-graph-1.41.0-17.el6_4.i686.rpm b5ca862fdfdc3ac1c8da7e9cce4fc804796ead79db1d7e85463ee197321817c3 boost-graph-mpich2-1.41.0-17.el6_4.i686.rpm 658ed676f6feba3fe362d3f6808fc4ecc0e404647392c53b2fd92c946e6e63c9 boost-graph-openmpi-1.41.0-17.el6_4.i686.rpm 2e907650c17616a22be5524ac6aa771b6a4b308a6227928dc82574fa1cfa6eb3 boost-iostreams-1.41.0-17.el6_4.i686.rpm 5547a19e1d017018da944a009a5f925991d589dc4ea7c2d58097f324...

...;). Of course, they are much quicker with "normal-reference". To speed things up, I tried to use the "npRmpi" package. I had a lot of trouble installing it - but after appealing to google and finding the following page: http://webappl.blogspot.co.uk/2012/01/install-rmpi-with-mpich2-environment.html npRmpi was finally installed (basically I just added the flags "-lmpl -lopa" to the definition of PKG_LIBS in the configure script, and in the R CMD INSTALL call, I passed the configure.args as the correct paths to my MPICH2 installation). However, when I call the &q...

Dear R People: I am having some trouble with the snow package. It requires MPICH2 and Rmpi. Rmpi is fine. However, I downloaded the MPICH2 package, and installed. There is no mpicc, mpirun, etc. Does anyone have any suggestions, please? Thanks in advance! Sincerely, Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Do...

On FC10 with openmpi and mpich2 installed, the command "R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" (or /usr/lib64/mpich2) fails with the error ''cannot find mpi.h". Doing a (s)locate indicates no header file labeled as such. Would appreciate any trailheads. TIA, V. -...

...package 'Rmpi' does not have a NAMESPACE and should be re-installed I have attempted to re-install Rmpi several times without success (both Rmpi 0.5-9 and 0.6-0 from local ZIP files). As suggested on the developer website for Rmpi (http://www.stats.uwo.ca/faculty/yu/Rmpi/) I am using MPICH2 as my MPI implementation and I have followed the 'Rmpi for Windows' installation instructions detailed there, and MPICH2 appears to be running properly. Does anyone have an insight into the nature/cause of the namespace issue and how I can resolve it? I will be most grateful! Many...

...lib.ext, error: shared object '/auto/usc/R/2.13.0/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded Execution halted ERROR: loading failed * removing ?/auto/usc/R/2.13.0/lib64/R/library/Rmpi? I've tried google, but didn't get very far. The only information I found was relative to mpich2... Is it that I need to move towards mpich2? All of the testing done by my predecessor indicated that mpich2 was much slower then mpich1, so we never put much time into installing it. If I knew more about R, I might know how to keep that Rmpi.so file around so that I could see if it is linked to a...