Hi all, Im very new to R so please forgive my poor language! I've been trying to map on my list of probeids the relative annotation but unsuccessfully. I get this error symbols <- mget(probes,mouse4302SYMBOL,ifnotfound=NA) Error in .checkKeysAreWellFormed(keys) : keys must be supplied in a character vector with no NAs Thanks for your help! Brawni -- View this message in context: http://r.789695.n4.nabble.com/Bioconductor-merging-annotation-with-list-of-probeids-tp4648251.html Sent from the R help mailing list archive at Nabble.com.
Martin Morgan
2012-Nov-02 19:50 UTC
[R] Bioconductor, merging annotation with list of probeids
On 11/02/2012 10:32 AM, Brawni wrote:> Hi all, > Im very new to R so please forgive my poor language! I've been trying to map > on my list of probeids the relative annotation but unsuccessfully. I get > this error > symbols <- mget(probes,mouse4302SYMBOL,ifnotfound=NA) > Error in .checkKeysAreWellFormed(keys) : > keys must be supplied in a character vector with no NAsHi -- please ask questions about Bioconductor packages on the Bioconductor mailing list. http://bioconductor.org/help/mailing-list/ 'probes' should be a character vector; maybe it's a factor, list, or ?? What does class(probes) say? Martin> > Thanks for your help! > > Brawni > > > > -- > View this message in context: http://r.789695.n4.nabble.com/Bioconductor-merging-annotation-with-list-of-probeids-tp4648251.html > Sent from the R help mailing list archive at Nabble.com. > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793