Displaying 2 results from an estimated 2 matches for "checkkeysarewellformed".
2012 Nov 02
1
Bioconductor, merging annotation with list of probeids
Hi all,
Im very new to R so please forgive my poor language! I've been trying to map
on my list of probeids the relative annotation but unsuccessfully. I get
this error
symbols <- mget(probes,mouse4302SYMBOL,ifnotfound=NA)
Error in .checkKeysAreWellFormed(keys) :
keys must be supplied in a character vector with no NAs
Thanks for your help!
Brawni
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2010 Feb 13
1
Using getSYMBOL, annotate package on a list with empty elements.
...uot;110433" "2640544" "4900370"
"1430280"
IEA NAS TAS IEA
"6110044" "1170615" "6590546" "1690632"
$`GO:0000052`
[1] NA
goG=sapply(test.goP,getSYMBOL,data="hgu95av2")
error: "Error in .checkKeysAreWellFormed(keys) :
keys must be supplied in a character vector with no NAs "
In this the 14th element has missing values, thus getSYMBOL raises issues.
GetSYMBOL has to be given a char array, so a simple solution is infact to
delete the missing elements from the list.
I have been trying to find a sol...