R Compiliing or installation failure on FreeBSD
9.0-RELEASE FreeBSD ; I386 box.
configuring with the default settings, no 'options' =>
./configure
...
...
...
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from fc... configure:
WARNING: compilation failed
checking for Fortran 77 libraries of fc...
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99... -L/usr/local/lib
-L/usr/lib -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... configure: error:
in `/usr/local/src/R-2.15.1':
configure: error: cannot compile a simple Fortran program
See `config.log' for more details
jaymax-#393:# ls config.log
config.log
jaymax-#394:# wc config.log
3859 14227 118427 config.log
jaymax-#395:# tail -30 config.log
...
...
...
#define HAVE_INTPTR_T 1
#define HAVE_UINTPTR_T 1
#define R_INLINE inline
#define SIZEOF_INT 4
#define INT_32_BITS 1
#define SIZEOF_LONG 4
#define SIZEOF_LONG_LONG 8
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 12
#define SIZEOF_SIZE_T 4
configure: exit 1
jaymax-#396:#
I then provided the compilers explicitly
./configure cc=gcc47 F77=gfortran47 CXX=g++47 FC=gfortran47
which seemed to run to completion w/ 1 SNAFU
R is now configured for i386-unknown-freebsd9.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -std=gnu99 -g -O2
Fortran 77 compiler: gfortran47 -g -O2
C++ compiler: g++47 -g -O2
Fortran 90/95 compiler: gfortran47 -g -O2
Obj-C compiler:
Interfaces supported: X11
External libraries: readline, ICU, lzma
Additional capabilities: PNG, JPEG, TIFF, NLS, cairo
Options enabled: shared BLAS, R profiling, Java
Recommended packages: yes
configure: WARNING: inconsolata.sty not found: PDF vignettes and
package manuals will not be rendered optimally
However,
jaymax-#492:# make install
installing doc ...
install: NEWS.rds: No such file or directory
*** Error code 71
Stop in /usr/local/src/R-2.15.1/doc.
*** Error code 1
Stop in /usr/local/src/R-2.15.1.
And
jaymax-#493:# make check
../../bin/R: not found
*** Error code 127
Stop in /usr/local/src/R-2.15.1/tests/Examples.
*** Error code 1
Stop in /usr/local/src/R-2.15.1/tests.
*** Error code 1
Stop in /usr/local/src/R-2.15.1/tests.
*** Error code 1
Stop in /usr/local/src/R-2.15.1.
jaymax-#494:#
I am at a bit of a loss figuring out the problem here, the log file does
not seem to give any info
Need some direction/help
Thanks in advance.
On 21.10.2012 02:47 (UTC+2), J. Maxwell wrote:> R Compiliing or installation failure on FreeBSD > 9.0-RELEASE FreeBSD ; I386 box. > > configuring with the default settings, no 'options' => > > ./configureIs there any reason that you are not using the FreeBSD ports system, in this case /usr/ports/math/R? It builds and installs just fine. I am using it for years now. In many cases it should be useful to enable the ports option LIBR to get a R shared library and a dynamically linked R. Hope this helps, Rainer> ... > ... > ... > > checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes > checking for gcc -std=gnu99 option to support OpenMP... -fopenmp > checking how to get verbose linking output from fc... configure: > WARNING: compilation failed > > checking for Fortran 77 libraries of fc... > checking how to get verbose linking output from gcc -std=gnu99... -v > checking for C libraries of gcc -std=gnu99... -L/usr/local/lib > -L/usr/lib -lgcc_s > checking for dummy main to link with Fortran 77 libraries... none > checking for Fortran 77 name-mangling scheme... configure: error: in > `/usr/local/src/R-2.15.1': > configure: error: cannot compile a simple Fortran program > See `config.log' for more details > > jaymax-#393:# ls config.log > config.log > > jaymax-#394:# wc config.log > 3859 14227 118427 config.log > > jaymax-#395:# tail -30 config.log > ... > ... > ... > #define HAVE_INTPTR_T 1 > #define HAVE_UINTPTR_T 1 > #define R_INLINE inline > #define SIZEOF_INT 4 > #define INT_32_BITS 1 > #define SIZEOF_LONG 4 > #define SIZEOF_LONG_LONG 8 > #define SIZEOF_DOUBLE 8 > #define SIZEOF_LONG_DOUBLE 12 > #define SIZEOF_SIZE_T 4 > > configure: exit 1 > jaymax-#396:# > > I then provided the compilers explicitly > ./configure cc=gcc47 F77=gfortran47 CXX=g++47 FC=gfortran47 > > which seemed to run to completion w/ 1 SNAFU > > R is now configured for i386-unknown-freebsd9.0 > > Source directory: . > Installation directory: /usr/local > > C compiler: gcc -std=gnu99 -g -O2 > Fortran 77 compiler: gfortran47 -g -O2 > > C++ compiler: g++47 -g -O2 > Fortran 90/95 compiler: gfortran47 -g -O2 > Obj-C compiler: > > Interfaces supported: X11 > External libraries: readline, ICU, lzma > Additional capabilities: PNG, JPEG, TIFF, NLS, cairo > Options enabled: shared BLAS, R profiling, Java > > Recommended packages: yes > > configure: WARNING: inconsolata.sty not found: PDF vignettes and > package manuals will not be rendered optimally > > However, > jaymax-#492:# make install > > installing doc ... > install: NEWS.rds: No such file or directory > *** Error code 71 > > Stop in /usr/local/src/R-2.15.1/doc. > *** Error code 1 > > Stop in /usr/local/src/R-2.15.1. > > And > > jaymax-#493:# make check > > ../../bin/R: not found > *** Error code 127 > > Stop in /usr/local/src/R-2.15.1/tests/Examples. > *** Error code 1 > > Stop in /usr/local/src/R-2.15.1/tests. > *** Error code 1 > > Stop in /usr/local/src/R-2.15.1/tests. > *** Error code 1 > > Stop in /usr/local/src/R-2.15.1. > > jaymax-#494:# > > I am at a bit of a loss figuring out the problem here, the log file does > not seem to give any info > Need some direction/help > > Thanks in advance.
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