R help - Nov 2011 - Question

Hi
My name is Rocky and I am trying to use the org.Dm.eg.db library.
When I am using the org.Dm.egFLYBASE2EG[fb_ids] it is stopping at a point where
it cannot find any value for a given ID such as the following:
Error in .checkKeys(value, Rkeys(x), x@ifnotfound) :
  value for "FBgn0004461" not found
Then the whole thing stops. I cannot retrieve any information on the values that
has been found until this ID was reached.
Can anyone help in retrieving all the IDs without stopping at a certain ID or if
the value for the ID not found just generate an NA for that ID but do not stop.
Another thing when I am using FlybaseID converter FBgn0004461 ID shows a value.
I am not sure why R is not able to retrieve it.
Please comment on this.
Waiting for your reply.
Thanking you
Rocky

	[[alternative HTML version deleted]]

I suspect you are lost. This is almost certainly more appropriate on  
the BioConductor list. There are relatively few people on this list  
who will know what (un-named) packages you might be using. Read the  
Posting Guide, note the link to the Bioconductor mailing list page,   
configure your mailer for plain text, and subscribe to the help list  
at Bioc.

Then construct a post that shows your code, and mentions all the  
packages being required.

-- 
David.


On Nov 8, 2011, at 11:22 AM, Parida, Mrutyunjaya wrote:
> Hi
> My name is Rocky and I am trying to use the org.Dm.eg.db library.
> When I am using the org.Dm.egFLYBASE2EG[fb_ids] it is stopping at a  
> point where it cannot find any value for a given ID such as the  
> following:
> Error in .checkKeys(value, Rkeys(x), x at ifnotfound) :
>  value for "FBgn0004461" not found
> Then the whole thing stops. I cannot retrieve any information on the  
> values that has been found until this ID was reached.
> Can anyone help in retrieving all the IDs without stopping at a  
> certain ID or if the value for the ID not found just generate an NA  
> for that ID but do not stop.
> Another thing when I am using FlybaseID converter FBgn0004461 ID  
> shows a value. I am not sure why R is not able to retrieve it.
> Please comment on this.
> Waiting for your reply.
> Thanking you
> Rocky
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
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> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
West Hartford, CT