Can't installe packag maDB or limma. Error is shown as Using R version 2.13.1, biocinstall version 2.8.4. Installing Bioconductor version 2.8 packages: Is there any other way to draw volcano plot ? Thanks [[alternative HTML version deleted]]
Use the ggplot2 package in order to make a volcano plot! Check out the
following book for more information about the package: ggplot2: Elegant
Graphics for Data Analysis (Use R) by Hadley Wickham. ggplot2 is great for
creating professional graphics in no time.
If you look up stat_density in R, you will find the following example at the
bottom of the page:
# Make a volcano plot
ggplot(diamonds, aes(x = price)) +
stat_density(aes(ymax = ..density.., ymin = -..density..),
fill = "grey50", colour = "grey50",
geom = "ribbon", position = "identity") +
facet_grid(. ~ cut) +
coord_flip()
Good luck!
Anna
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On 6 September 2011 08:01, KnifeBoot <knifeboot at 163.com> wrote:> ?Can't installe packag maDB or limma.Which R version, and what platform are you using? -- Sent from my mobile device Envoyait de mon telephone mobil
Using R version 2.13.1 Windows 7 Ultimate 64-bit At 2011-09-06 14:51:09,"Hasan Diwan" <hasan.diwan at gmail.com> wrote:>On 6 September 2011 08:01, KnifeBoot <knifeboot at 163.com> wrote: >> ?Can't installe packag maDB or limma. > >Which R version, and what platform are you using? >-- >Sent from my mobile device >Envoyait de mon telephone mobil