similar to: r-help volcano plot

Hey, Is there any function plotting several "implicit functions" (F(x,y)=0) on the same fig. Is there anyone who has an example code of how to do this? The contour3d function in the misc3d package only work with the functions with three dimensions. Thanks a lot. Many thanks for your help. KnifeBoot [[alternative HTML version deleted]]

Hi After a few days of very fine work, my dom0 went mad. (using xen-3.0.2) It''s ksoftirqd keeps 70% of cpu all the time. Is there anything I can do? Regards, Steffen begin 666 smime.p7s M,( &"2J&2(;W#0$''`J" ,( "`0$Q"S )!@4K#@,"&@4`,( &"2J&2(;W#0$'' M`0``H(())#""`JPP@@(5H ,"`0("`P]Z''3

Is there anybody willing to help me with the method of plot. please show me the command lines to plot the implicit function "x^4+y^3=x^2+y" and "x=(sin[t])^3 y=(cos[t])^3 t :[0,2*pi] " I can learn how to plot implicit functions from your command lines. Thanks a lot KnifeBoot [[alternative HTML version deleted]]

Hi I am using the ggplot2 package for the volcano plot and I am using the following code for the same: g = ggplot(data=data, aes(x=data[11], y=-log10(data[12]), colour=threshold)) + + geom_point(alpha=0.4, size=1.75) + + opts(legend.position = "none") + + xlim(c(-10, 10)) + ylim(c(0, 15)) + + xlab("log2 fold change") + ylab("-log10 p-value") data[11] is a

Hi all, I am using ggplot2 and continuing to find it very useful and pretty. However, I am trying to create some graphics for publication that would be included in an MS Word document (not my choice!) in Windows Vista. The problem is that I want to use stat_smooth() to add an fitted linear model line along with its 95% confidence band, but I cannot seem to get the confidence band in a format

Hello all, I was trying to make a volcano plot with some real data, using log2(ratio) vs. Z-value significance. However the scatter of the points is too less contrary to 'normal' volcano plots and I'm getting a sharp 'V' shaped plot. *Am I doing something wrong here?* The data(ratio) is available from pastebin: http://pastebin.com/m2Jss3qF data <-

http://www.physorg.com/news65033298.html Switch to Rails before it''s too late, folks! Jeff -- Posted via http://www.ruby-forum.com/.

Hi, I wanted to plot 2 lines on a single graph. Each graph has one axis that can be common. The code that I'm using is: ------------------------------------------------------- par(mfrow=c(1, 1)) x1 <- c(2, 4, 6, 8, 10, 12) x2 <- c(10, 20, 30, 40, 50, 60) y1 <- c(10,12,15,22,34,21) y2 <- c(40, 130, 150, 145, 40, 30) par(las=1, mar=c(4, 4, 2, 4)) plot.new()

Like this? # example using qplot library(ggplot2) meanprice <- tapply(diamonds$price, diamonds$cut, mean);meanprice cut <- factor(levels(diamonds$cut), levels = levels(diamonds$cut)) qplot(cut, meanprice, geom="bar", stat="identity", fill = I("grey50")) dev.new() # create a new graph to compare with qplot # Example using ggplot ggdata <-

Hello. My name is Akashah. i work at metabolic laboratory. From my study, i found that volcano plot can help a lot in my section.  i already studied about the volcano plot and get the coding to run in R software, unfortunately, there is may be something wrong with the coding. This is because  no graph appear, but no error (blue color text) was shown on the R console. Below is the coding for

Hi, I am newbie user of ggplot and would like some assistance in implementing time series plots. I'd like to know how the tsdiag plot can be made in ggplot? Thanks Harsh Singhal Decisions Systems, Mu Sigma Inc.

Dear R help group I've been working on this plot for a while now and now getting around to the minor adjusments. I would like to be able to put a border and background fill around the legend in this plot. I understand the legend 'bty' should do this have this capablity but not sure how the syntax works in this case ###### initalise library("lattice")

Dear all, being a relative beginner in R, I apologize for posting the second question within two days. So I want a stacked barchart, which should look like the one produced by this code: Tuvalu <- c(9,3,4,0,3,0,0) Singapor <- c(38,0,0,0,12,19,0) Samoa <- c(26,16,2,0,5,2,0) PNG <- c(56,4,0,5,2,0,56) Micronesia <- c(6,0,0,0,0,0,0) graph4 <-

Dear list,   I made boxplots using ggplot and want to control for x- and yaxis. Using "plot" I can do it by setting cex.axis equally to any size but can't figure out how to do it with ggplot.     ggplot(dat, aes(x = factor(time), y = volume)) + opts(axis.title.x=theme_text(size=8),axis.title.y=theme_text(size=8)) + geom_boxplot() + geom_jitter(aes(colour = id))+labs(x =

Dear R-help listers, I want to add 95% confidential interval as vertical lines to x axe in density plot. I have found the library(hdrcde) can do this work, but I do not know how to handle functions of this library when I used ggplot2 to draw the graph. Thank you in advance. The data and codes followed: # dummy data factor<-rep(c("Alice","Jone","Mike"),each=100)

Dear list, Is there a way to reorder the xaxis using lattice. Using the following data, the x-axis is ordered as BP GH MH PF RE RP SF VT but I would like the x-axis to be ordered as PF RP BP GH VT SF RE MH. Kön Skalor Tillfälle Medelvärde 1 Kvinnor BP 1-inskrivning 36.45283 2 Kvinnor GH 1-inskrivning 38.62255 3 Kvinnor MH 1-inskrivning 62.88889 4

Hola comunidad, tengo el siguiente problema con la funcion stat_density2d (estimacion de densidad 2d.) del paquete ggplot2 stat_density2d (mapping = NULL, data = NULL, geom = "density2d", position = "identity", na.rm = FALSE, contour = TRUE, n = 100, ...) de esta función requiero ver el cálculo númerico de la estimación de la densidad, cuento con el siguiente codigo y

Dear R users, First just want to say thank you to all for developing such a wonderful software and packages. I need to produce a wind rose plot. Tried with packages circular and plotrix and couldn't quite get what I want. Moved to package ggplot2 and it's going great. However stuck in how to move axis labels. I am using the wind rose from the help to learn how to do what I need (code

Dear R-listers, I have created a plot to display the density lines for the same variable by different entities. Now, I want to fill the area under the density lines with semitransparent colors. Though I have checked that in web-searching and book-reading, I still do not perform that. Could anyone please give me any helps or advice? Thank you in advance. The data and code I used listed below: #

I have approximately 2.5 million rows from a number of sensor readings. Having plotted these, I can see a given pattern (say a spike in the amplitude away from the mean). I would now like to automate this procedure as we're expecting a great deal more data in the near future. Is there any package or function that will make this possible? Many thanks! I suppose, I could do something like: