Dear Sir, I would like to ask whether there is any tool in R, developed for the function of non parametric Anova, where the non parametric analysis is able to compute the p-value for interaction as well (similar to Anova)? If not, would sir like to suggest any of the other statistical software around which would have this tool? Thank you. LYLing. ?SAVE PAPER! SAVE THE WORLD! - Please do not print this e-mail unless necessary? This e-mail and the attachments are intended solely for the person to whom it has been addressed. It contains privileged and/or confidential information and is privileged or otherwise protected from disclosure. If you are not the person for whom this e-mail was intended, or the e-mail has reached you by mistake, please delete it immediately and inform us of the error. Our e-mail address is administrator at uniten.edu.my. All opinions, conclusions and other information in this message that do not relate to the official business of Universiti Tenaga Nasional (UNITEN) shall be understood as neither given nor endorsed by UNITEN. UNITEN shall not be responsible for any activity that may be considered as illegal and/or improper use of e-mail and UNITEN further disclaims and shall not accept liability for any content of this e-mail, or for the consequences of any actions taken on the basis of the information provided, unless that information is subsequently confirmed in writing. WARNING Internet communications cannot be guaranteed to be secured or error-free as information could be intercepted, corrupted, lost, arrive late or contain viruses. As such, we do not accept liability for any errors or omissions in the content of this message which may arise as a result of internet transmission. UNITEN does not authorize any of its employees to make any defamatory or seditious statements or commit any offence which is contrary to the laws of Malaysia. Any such communications and/or actions by such employees are outside the scope of employment of the said individuals and UNITEN shall not be liable for such communications and/or actions.
Non- Parametric equivalent to parametric anova is Kruskal-Wallis test - I am not sure R has any function for this - I am new to R (I think R should have it already) - SAS has this option. Sharif -----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] On Behalf Of Loo Yim Ling Sent: Thursday, June 16, 2011 4:24 AM To: r-help at R-project.org Subject: [R] NonParametric Anova Dear Sir, I would like to ask whether there is any tool in R, developed for the function of non parametric Anova, where the non parametric analysis is able to compute the p-value for interaction as well (similar to Anova)? If not, would sir like to suggest any of the other statistical software around which would have this tool? Thank you. LYLing. ?SAVE PAPER! SAVE THE WORLD! - Please do not print this e-mail unless necessary? This e-mail and the attachments are intended solely for the person to whom it has been addressed. It contains privileged and/or confidential information and is privileged or otherwise protected from disclosure. If you are not the person for whom this e-mail was intended, or the e-mail has reached you by mistake, please delete it immediately and inform us of the error. Our e-mail address is administrator at uniten.edu.my. All opinions, conclusions and other information in this message that do not relate to the official business of Universiti Tenaga Nasional (UNITEN) shall be understood as neither given nor endorsed by UNITEN. UNITEN shall not be responsible for any activity that may be considered as illegal and/or improper use of e-mail and UNITEN further disclaims and shall not accept liability for any content of this e-mail, or for the consequences of any actions taken on the basis of the information provided, unless that information is subsequently confirmed in writing. WARNING Internet communications cannot be guaranteed to be secured or error-free as information could be intercepted, corrupted, lost, arrive late or contain viruses. As such, we do not accept liability for any errors or omissions in the content of this message which may arise as a result of internet transmission. UNITEN does not authorize any of its employees to make any defamatory or seditious statements or commit any offence which is contrary to the laws of Malaysia. Any such communications and/or actions by such employees are outside the scope of employment of the said individuals and UNITEN shall not be liable for such communications and/or actions. ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
You could do this using permutation tests. If everything is balanced and orthogonal then you can permute the predictors, otherwise you can follow these main steps: 1. Formulate the test of interest as a full and reduced model test and find the F statistic (or other, but I will assume F) for the original data. 2. From the reduced model above find and save the residuals and fitted values. 3. Randomly permute the residuals and add them to the fitted values. 4. Do the full and reduced test on this new data and find the F statistic. 5. Repeat steps 3 and 4 a bunch of times (like 1,998) saving the F statistic each time. 6. The p-value is the proportion of F stats (including the original) that are greater than or equal to the original F stat. This is fairly easy to code in R using the replicate, aov/lm, sample, fitted, and resid functions. I don't know of a built in function to do all of this for you, but I expect that writing the code to do this will be simpler than explaining to a built in function exactly what you want to test. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.snow at imail.org 801.408.8111> -----Original Message----- > From: r-help-bounces at r-project.org [mailto:r-help-bounces at r- > project.org] On Behalf Of Loo Yim Ling > Sent: Thursday, June 16, 2011 2:24 AM > To: r-help at R-project.org > Subject: [R] NonParametric Anova > > Dear Sir, > > I would like to ask whether there is any tool in R, developed for the > function of non parametric Anova, where the non parametric analysis is > able to compute the p-value for interaction as well (similar to Anova)? > If not, would sir like to suggest any of the other statistical software > around which would have this tool? > Thank you. > > LYLing. >
A function for non-parametric multivariate analysis of variance (should do univariate, too, I guess) allowing for interactions (as far as I can tell) is implemented in the anosim() function of the "vegan" package. See also: http://cc.oulu.fi/~jarioksa/opetus/metodi/vegantutor.pdf http://cran.r-project.org/web/packages/vegan/vegan.pdf http://onlinelibrary.wiley.com/doi/10.1111/j.1442-9993.2001.01070.pp.x/full HTH, Daniel Loo Yim Ling wrote:> > Dear Sir, > > I would like to ask whether there is any tool in R, developed for the > function of non parametric Anova, where the non parametric analysis is > able to compute the p-value for interaction as well (similar to Anova)? If > not, would sir like to suggest any of the other statistical software > around which would have this tool? > Thank you. > > LYLing. > > ?SAVE PAPER! SAVE THE WORLD! - Please do not print this e-mail unless > necessary? > > This e-mail and the attachments are intended solely for the person to whom > it has been addressed. It contains privileged and/or confidential > information and is privileged or otherwise protected from disclosure. If > you are not the person for whom this e-mail was intended, or the e-mail > has reached you by mistake, please delete it immediately and > inform us of the error. Our e-mail address is administrator at uniten.edu.my. > > All opinions, conclusions and other information in this message that do > not relate to the official business of Universiti Tenaga Nasional (UNITEN) > shall be understood as neither given nor endorsed by UNITEN. UNITEN shall > not be responsible for any activity that may be considered as illegal > and/or improper use of e-mail and UNITEN further disclaims and shall not > accept liability for any content of this e-mail, or for the consequences > of any actions taken on the basis of the information provided, unless that > information is subsequently confirmed in writing. > > WARNING > Internet communications cannot be guaranteed to be secured or error-free > as information could be intercepted, corrupted, lost, arrive late or > contain viruses. As such, we do not accept liability for any errors or > omissions in the content of this message which may arise as a result of > internet transmission. > > UNITEN does not authorize any of its employees to make any defamatory or > seditious statements or commit any offence which is contrary to the laws > of Malaysia. Any such communications and/or actions by such employees are > outside the scope of employment of the said individuals and UNITEN shall > not be liable for such communications and/or actions. > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- View this message in context: http://r.789695.n4.nabble.com/NonParametric-Anova-tp3601876p3604726.html Sent from the R help mailing list archive at Nabble.com.
Hi Loo, This topic has been asked a lot. I've complied a bunch of tutorials and relevant functions here: http://www.r-statistics.com/2010/04/repeated-measures-anova-with-r-tutorials/ If you find resources which I haven't listed, please let me know... Best, Tal ----------------Contact Details:------------------------------------------------------- Contact me: Tal.Galili@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) ---------------------------------------------------------------------------------------------- On Thu, Jun 16, 2011 at 11:23 AM, Loo Yim Ling <LYLing@uniten.edu.my> wrote:> Dear Sir, > > I would like to ask whether there is any tool in R, developed for the > function of non parametric Anova, where the non parametric analysis is able > to compute the p-value for interaction as well (similar to Anova)? If not, > would sir like to suggest any of the other statistical software around which > would have this tool? > Thank you. > > LYLing. > > “SAVE PAPER! SAVE THE WORLD! - Please do not print this e-mail unless > necessary” > > This e-mail and the attachments are intended solely for the person to whom > it has been addressed. It contains privileged and/or confidential > information and is privileged or otherwise protected from disclosure. If you > are not the person for whom this e-mail was intended, or the e-mail has > reached you by mistake, please delete it immediately and > inform us of the error. Our e-mail address is administrator@uniten.edu.my. > > All opinions, conclusions and other information in this message that do not > relate to the official business of Universiti Tenaga Nasional (UNITEN) shall > be understood as neither given nor endorsed by UNITEN. UNITEN shall not be > responsible for any activity that may be considered as illegal and/or > improper use of e-mail and UNITEN further disclaims and shall not accept > liability for any content of this e-mail, or for the consequences of any > actions taken on the basis of the information provided, unless that > information is subsequently confirmed in writing. > > WARNING > Internet communications cannot be guaranteed to be secured or error-free as > information could be intercepted, corrupted, lost, arrive late or contain > viruses. As such, we do not accept liability for any errors or omissions in > the content of this message which may arise as a result of internet > transmission. > > UNITEN does not authorize any of its employees to make any defamatory or > seditious statements or commit any offence which is contrary to the laws of > Malaysia. Any such communications and/or actions by such employees are > outside the scope of employment of the said individuals and UNITEN shall not > be liable for such communications and/or actions. > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]
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