Hi there, I need a network builder and it can change the node size and color; I am not sure if network package in R can do this or not. The other functions I wanted have been found in that package. BTW, if there is another package in R relating to this, please suggest too. Thanks, Weiwei -- Weiwei Shi, Ph.D Research Scientist "Did you always know?" "No, I did not. But I believed..." ---Matrix III [[alternative HTML version deleted]]
On May 27, 2011, at 5:32 PM, Weiwei Shi wrote:> Hi there, > > I need a network builder and it can change the node size and color; > I am not > sure if network package in R can do this or not. The other functions I > wanted have been found in that package. >When I type ??network at my console I get pages and pages of possibilities including several from that package. Even more appear when I do a search of all functions: > library(sos) > findFn("network") found 1669 matches; retrieving 20 pages, 400 matches. 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Have you done _any_ searching? At the moment it would appear difficult to know whether any of these possibilities is useful for your porpoises. You can also restrict your searching to vignettes: http://search.r-project.org/cgi-bin/namazu.cgi?query=network&max=100&result=normal&sort=score&idxname=vignettes Results: References: [ network: 231 ] Total 231 documents matching your query.> BTW, if there is another package in R relating to this, please > suggest too. > > Thanks, > > Weiwei > > -- > Weiwei Shi, Ph.D > Research Scientist > > > "Did you always know?" > "No, I did not. But I believed..." > ---Matrix III > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius, MD West Hartford, CT
Weiwei, I know this is not a Bioconductor-specific question, but you may also want to post it on BiC help list, as there may be more people there understand what you want to do. I'm also curious about the answers to your question. ...Tao ----- Original Message ----> From: Weiwei Shi <helprhelp at gmail.com> > To: "r-help at stat.math.ethz.ch" <R-help at stat.math.ethz.ch> > Sent: Fri, May 27, 2011 2:32:23 PM > Subject: [R] network package in R > > Hi there, > > I need a network builder and it can change the node size and color; I am not > sure if network package in R can do this or not. The other functions I > wanted have been found in that package. > > BTW, if there is another package in R relating to this, please suggest too. > > Thanks, > > Weiwei > > -- > Weiwei Shi, Ph.D > Research Scientist > > > "Did you always know?" > "No, I did not. But I believed..." > ---Matrix III > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
Can you be more specific about what a network builder is? and what do you want exactly? Your question seems a bit vague. Best Ronggui On 28 May 2011 05:32, Weiwei Shi <helprhelp@gmail.com> wrote:> Hi there, > > I need a network builder and it can change the node size and color; I am > not > sure if network package in R can do this or not. The other functions I > wanted have been found in that package. > > BTW, if there is another package in R relating to this, please suggest too. > > Thanks, > > Weiwei > > -- > Weiwei Shi, Ph.D > Research Scientist > > > "Did you always know?" > "No, I did not. But I believed..." > ---Matrix III > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Wincent Ronggui HUANG Sociology Department of Fudan University PhD of City University of Hong Kong http://asrr.r-forge.r-project.org/rghuang.html [[alternative HTML version deleted]]
Hi, On Fri, May 27, 2011 at 5:32 PM, Weiwei Shi <helprhelp at gmail.com> wrote:> Hi there, > > I need a network builder and it can change the node size and color; I am not > sure if network package in R can do this or not. The other functions I > wanted have been found in that package. > > BTW, if there is another package in R relating to this, please suggest too.I'm not actually sure what you're looking for, but from trying to piece together the other emails in this thread maybe you are looking for a way to control graph/network layout in some GUI form? There is a bioconductor package called RCytoscape that can "drive" cytoscape from R, allowing you to draw a network you have loaded up in your R session and tweak different properties of nodes, edges, etc: http://www.bioconductor.org/packages/release/bioc/html/RCytoscape.html Maybe it can help you? I'm not sure if this is what you're asking for, though, so I could be way off the mark. HTH, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact