Juergen Rose
2011-May-20 18:28 UTC
[R] glmnet_1.6 fails to install due to unsupported Fortran 90 compiler
Hi, if I try to install glmnet, the installation fails with:> install.packages("glmnet",dependencies=TRUE)trying URL 'http://mirrors.softliste.de/cran/src/contrib/glmnet_1.6.tar.gz' Content type 'application/x-gzip' length 522657 bytes (510 Kb) opened URL =================================================downloaded 510 Kb * installing *source* package ?glmnet? ... This package has only been tested with gfortran. So some checks are needed. R_HOME is /usr/lib64/R Attempting to determine R_ARCH... R_ARCH is Attempting to detect how R was configured for Fortran 90.... Unsupported Fortran 90 compiler or Fortran 90 compilers unavailable! Stop! ERROR: configuration failed for package ?glmnet? * removing ?/usr/lib64/R/library/glmnet? The downloaded packages are in ?/tmp/RtmpBeEzO5/downloaded_packages? Updating HTML index of packages in '.Library' Warning message: In install.packages("glmnet", dependencies = TRUE) : installation of package 'glmnet' had non-zero exit status I have a gentoo-linux and gfortran belonging to gcc-4.5.2: root at moose:/root(46)# gfortran -v Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2/gfortran COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.5.2/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.5.2/work/gcc-4.5.2/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/include/g ++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --disable-lto --enable-nls --without-included-gettext --with-system-zlib --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/python --enable-checking=release --enable-java-awt=gtk --enable-languages=c,c ++,java,objc,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.5.2 p1.1, pie-0.4.5' Thread model: posix gcc version 4.5.2 (Gentoo 4.5.2 p1.1, pie-0.4.5) Any hint is appreciated.