I have just upgraded to R 2.13 and have library(ggplot2) in my .Rprofile (among other things). when i start R I get an error message. Has something in the start up scripts changed? Is there a better way to specify the library calls in .Rprofile? Thanks for all of the help in advance. Error: Loading required package: grid Loading required package: proto Error in rename(x, .base_to_ggplot) : could not find function "setNames" Error : unable to load R code in package 'ggplot2' Error: package/namespace load failed for 'ggplot2' [Previously saved workspace restored] Computer 1: R version 2.13.0 (2011-04-13) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets grid methods [8] base other attached packages: [1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1 Computer 2 R version 2.13.0 (2011-04-13) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets grid methods [8] base other attached packages: [1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1 -- Stephen Sefick ____________________________________ | Auburn University? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? | | Biological Sciences ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ?? ? ? ?| | 331 Funchess Hall? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?| | Auburn, Alabama? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ? ??? | | 36849? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? | |___________________________________| | sas0025 at auburn.edu? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ?| | http://www.auburn.edu/~sas0025? ? ? ? ? ?? ? ? | |___________________________________| Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods.? We are mammals, and have not exhausted the annoying little problems of being mammals. ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -K. Mullis "A big computer, a complex algorithm and a long time does not equal science." ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -Robert Gentleman
Out of curiosity, do you have a problem calling `library(ggplot2)` from the R prompt (after R is finished "spinning up")? I vaguely recall (~ 2 years ago) that I was trying to load some packages in my ~/.Rprofile since I thought I always wanted them in R anyway and had problems ... I've given up trying to do that, though :-) So -- doesn't answer your question, but if you have number of libraries you want to load up, but it's a pain to call individual `library()` calls, maybe you can define a .setup() function in your ~/.Rprofile that does all these library calls for you when you come to a point in your (interactive) work that you think you need them. -steve On Sat, Apr 16, 2011 at 2:47 PM, stephen sefick <ssefick at gmail.com> wrote:> I have just upgraded to R 2.13 and have library(ggplot2) in my > .Rprofile (among other things). ?when i start R I get an error > message. ?Has something in the start up scripts changed? ?Is there a > better way to specify the library calls in .Rprofile? ?Thanks for all > of the help in advance. > > Error: > > Loading required package: grid > Loading required package: proto > Error in rename(x, .base_to_ggplot) : could not find function "setNames" > Error : unable to load R code in package 'ggplot2' > Error: package/namespace load failed for 'ggplot2' > [Previously saved workspace restored] > > > Computer 1: > > R version 2.13.0 (2011-04-13) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C > ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 > ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 > ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C > ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?grid ? ? ?methods > [8] base > > other attached packages: > [1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1 > > Computer 2 > > R version 2.13.0 (2011-04-13) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C > ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 > ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 > ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C > ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?grid ? ? ?methods > [8] base > > other attached packages: > [1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1 > > -- > Stephen Sefick > ____________________________________ > | Auburn University? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? | > | Biological Sciences ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ?? ? ? ?| > | 331 Funchess Hall? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?| > | Auburn, Alabama? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ? ??? | > | 36849? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? | > |___________________________________| > | sas0025 at auburn.edu? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ?| > | http://www.auburn.edu/~sas0025? ? ? ? ? ?? ? ? | > |___________________________________| > > Let's not spend our time and resources thinking about things that are > so little or so large that all they really do for us is puff us up and > make us feel like gods.? We are mammals, and have not exhausted the > annoying little problems of being mammals. > > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -K. Mullis > > "A big computer, a complex algorithm and a long time does not equal science." > > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -Robert Gentleman > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
Is there any news on this issue? I have the same problem but on a Mac. I
have upgraded R and updated the built packages. The console output and
sessionInfo are below. The problem is triggered by library(ggplot2) my
.Rprofile If I do library(ggplot2) after the aborted start up ggplot2 is
loaded properly, and I can manually do everything in my .Rprofile and my
configuration is as originally intended. Thanks, Bryan
Console Output:
Loading required package: reshape
Loading required package: plyr
Attaching package: 'reshape'
The following object(s) are masked from 'package:plyr':
rename, round_any
Loading required package: grid
Loading required package: proto
Error in rename(x, .base_to_ggplot) : could not find function
"setNames"
Error : unable to load R code in package 'ggplot2'
Error: package/namespace load failed for 'ggplot2'
[R.app GUI 1.40 (5751) x86_64-apple-darwin9.8.0]
[History restored from /Users/bryanhanson/.Rhistory]
and here is my session info after the aborted start up:
R version 2.13.0 (2011-04-13)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets grid methods
base
other attached packages:
[1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1 lattice_0.19-23
***** Original Post from Stephen Sefick
I have just upgraded to R 2.13 and have library(ggplot2) in my
.Rprofile (among other things). when i start R I get an error
message. Has something in the start up scripts changed? Is there a
better way to specify the library calls in .Rprofile? Thanks for all
of the help in advance.
Error:
Loading required package: grid
Loading required package: proto
Error in rename(x, .base_to_ggplot) : could not find function
"setNames"
Error : unable to load R code in package 'ggplot2'
Error: package/namespace load failed for 'ggplot2'
[Previously saved workspace restored]
Computer 1:
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets grid methods
[8] base
other attached packages:
[1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1
Computer 2
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets grid methods
[8] base
other attached packages:
[1] proto_0.3-9.1 reshape_0.8.4 plyr_1.5.1
--
Stephen Sefick
____________________________________
| Auburn University? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? |
| Biological Sciences ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ?? ? ? ?|
| 331 Funchess Hall? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?|
| Auburn, Alabama? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? ? ??? |
| 36849? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ? |
|___________________________________|
| sas0025 at auburn.edu? ? ? ? ? ? ? ? ? ? ? ? ? ?? ? ? ?|
| http://www.auburn.edu/~sas0025? ? ? ? ? ?? ? ? |
|___________________________________|
--
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