R help - Mar 2011 - Problem with vegan package instalation on linux

Hi,

I try to install vegan package on debian linux and I give this error:

================================================* installing *source* package
'vegan' ...
** libs
make: *** No rule to make target `cepin.o', needed by `vegan.so'.  Stop.
*** arch - Rgnome
Warning in file(con, "r") :
  cannot open file '/usr/lib/R/etc/Rgnome/Makeconf': No such file or
directory
Error in file(con, "r") : cannot open the connection
* removing '/usr/local/lib/R/site-library/vegan'

The downloaded packages are in
        '/tmp/RtmpYgJz5c/downloaded_packages'
Warning message:
In install.packages("vegan") :
  installation of package 'vegan' had non-zero exit status
=============================================
I try to find the problem without success.

Anybody can help-me?

Thanks
Ronaldo

	[[alternative HTML version deleted]]

On Wed, 2011-03-09 at 11:41 -0300, Ronaldo Reis-Jr.
wrote:
> Hi,
> 
> I try to install vegan package on debian linux and I give this error:
Have you got a fortran compiler installed on your system? gcc-gfortran
is the package on my Fedora laptop.

G
> ================================================> * installing *source*
package 'vegan' ...
> ** libs
> make: *** No rule to make target `cepin.o', needed by `vegan.so'. 
Stop.
> *** arch - Rgnome
> Warning in file(con, "r") :
>   cannot open file '/usr/lib/R/etc/Rgnome/Makeconf': No such file
or
> directory
> Error in file(con, "r") : cannot open the connection
> * removing '/usr/local/lib/R/site-library/vegan'
> 
> The downloaded packages are in
>         '/tmp/RtmpYgJz5c/downloaded_packages'
> Warning message:
> In install.packages("vegan") :
>   installation of package 'vegan' had non-zero exit status
> =============================================> 
> I try to find the problem without success.
> 
> Anybody can help-me?
> 
> Thanks
> Ronaldo
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
-- 
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
 Dr. Gavin Simpson             [t] +44 (0)20 7679 0522
 ECRC, UCL Geography,          [f] +44 (0)20 7679 0565
 Pearson Building,             [e] gavin.simpsonATNOSPAMucl.ac.uk
 Gower Street, London          [w] http://www.ucl.ac.uk/~ucfagls/
 UK. WC1E 6BT.                 [w] http://www.freshwaters.org.uk
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Try the posting guide, and do remember to give the 'at a minumum' 
information you were asked for.

I suspect this is not a recent version of R (but you were asked to 
update before posting).  If it is, please explain what 
/usr/local/bin/Rgnome is doing in the R installation -- it was last 
supported in 2.8.x.

In any case
R CMD INSTALL --no-multiarch
should solve the problem, but to avoid wasting your own and the 
helpers' time, please make a clean installation of R 2.12.2.

On Wed, 9 Mar 2011, Ronaldo Reis-Jr. wrote:
> Hi,
>
> I try to install vegan package on debian linux and I give this error:
>
> ================================================> * installing *source*
package 'vegan' ...
> ** libs
> make: *** No rule to make target `cepin.o', needed by `vegan.so'. 
Stop.
> *** arch - Rgnome
> Warning in file(con, "r") :
>  cannot open file '/usr/lib/R/etc/Rgnome/Makeconf': No such file or
> directory
> Error in file(con, "r") : cannot open the connection
> * removing '/usr/local/lib/R/site-library/vegan'
>
> The downloaded packages are in
>        '/tmp/RtmpYgJz5c/downloaded_packages'
> Warning message:
> In install.packages("vegan") :
>  installation of package 'vegan' had non-zero exit status
> =============================================>
> I try to find the problem without success.
>
> Anybody can help-me?
>
> Thanks
> Ronaldo
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595