Hello list, I?ve been trying to get OpenBUGS running on my mac using the wine emulator. I can run Openbugs just fine by doing: wine ~/OpenBUGS312/OpenBUGS.exe In the terminal, so OpenBUGS works. When I try to run the schools example using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no log, no script, no output of any sort. The rbugs () call makes the init, data, model and script file, but there seems to be a problem with R piping the script to OpenBUGS, here is my example library(rbugs) data(schools) J <- nrow(schools) y <- schools$estimate y <- rnorm(length(y)) sigma.y <- schools$sd schools.data <- list ("J", "y", "sigma.y") ## schools.data <- list(J=J, y=y, sigma.y=sigma.y) inits <- function() {list (theta=rnorm(J,0,100), mu.theta=rnorm(1,0,100), sigma.theta=runif(1,0,100))} parameters <- c("theta", "mu.theta", "sigma.theta") schools.bug <- file.path(.path.package("rbugs"), "bugs/model", "schools.bug") file.show(schools.bug) #This almost runs, it makes all files, but doesn't run the script schools.sim <- rbugs(data=schools.data, inits, parameters, schools.bug, n.chains=3, n.iter=10000,seed=123, workingDir="/Users/ozd504/Documents/", bugsWorkingDir="/Users/ozd504/Documents/", useWine=TRUE, wine="/opt/local/bin/wine", bugs = "/Users/ozd504/OpenBUGS312/ OpenBUGS.exe",OpenBugs=T, debug=TRUE) This Returns an error saying that bugs terminated before the coda could be written I can also send a screen shot of what happens if anyone is interested. Any help would be most appreciated. Here is my sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] R2WinBUGS_2.1-16 coda_0.14-2 lattice_0.19-13 rbugs_0.4-9 loaded via a namespace (and not attached): [1] grid_2.12.1 tools_2.12.1 Thanks, Corey Corey Sparks Assistant Professor Department of Demography and Organization Studies University of Texas at San Antonio 501 West Durango Blvd Monterey Building 2.270C San Antonio, TX 78207 210-458-3166 corey.sparks 'at' utsa.edu
Hello list, I’ve been trying to get OpenBUGS running on my mac using the wine emulator. I can run Openbugs just fine by doing: wine ~/OpenBUGS312/OpenBUGS.exe In the terminal, so OpenBUGS works. When I try to run the schools example using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no log, no script, no output of any sort. The rbugs() call makes the init, data, model and script file, but there seems to be a problem with R piping the script to OpenBUGS, here is my example library(rbugs) data(schools) J <- nrow(schools) y <- schools$estimate y <- rnorm(length(y)) sigma.y <- schools$sd schools.data <- list ("J", "y", "sigma.y") ## schools.data <- list(J=J, y=y, sigma.y=sigma.y) inits <- function() {list (theta=rnorm(J,0,100), mu.theta=rnorm(1,0,100), sigma.theta=runif(1,0,100))} parameters <- c("theta", "mu.theta", "sigma.theta") schools.bug <- file.path(.path.package("rbugs"), "bugs/model", "schools.bug") file.show(schools.bug) #This almost runs, it makes all files, but doesn't run the script schools.sim <- rbugs(data=schools.data, inits, parameters, schools.bug, n.chains=3, n.iter=10000,seed=123, workingDir="/Users/ozd504/Documents/", bugsWorkingDir="/Users/ozd504/Documents/", useWine=TRUE, wine="/opt/local/bin/wine", bugs = "/Users/ozd504/OpenBUGS312/OpenBUGS.exe",OpenBugs=T, debug=TRUE) This Returns an error saying that bugs terminated before the coda could be written I can also send a screen shot of what happens if anyone is interested. Any help would be most appreciated. Here is my sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] R2WinBUGS_2.1-16 coda_0.14-2 lattice_0.19-13 rbugs_0.4-9 loaded via a namespace (and not attached): [1] grid_2.12.1 tools_2.12.1 Thanks, Corey Corey S. Sparks, Ph.D. Assistant Professor Department of Demography and Organization Studies University of Texas San Antonio 501 West Durango Blvd San Antonio, TX 78207 email:corey.sparks@utsa.edu web: rowdyspace.utsa.edu/users/ozd504/www/index.htm [[alternative HTML version deleted]]