search for: openbugs

Dear list, I'm trying to embed OpenBUGS in an R package for use of it on 64-bit Linux. In order to get the CLI working one has to compile C code contained in $OpenBUGS/Manuals/CBugs.html (copied to say CBugs.c) using gcc -m32 -o bugs CBugs.c -ldl I put the OpenBUGS distribution in the ./inst subdirectory of the packa...

I installed wine 1.2.3 on Mac OS X 10.6.8 with the hopes of getting OpenBUGs running, but no success. It seems like OpenBUGs installs properly, but when I try to open it, I get the following: wine: cannot find L"C:\\windows\\system32\\OpenBUGS.exe What does this mean/how can I fix it?

Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can successfully switch to OpenBugs and run the same model and get the ba...

Hello list, I?ve been trying to get OpenBUGS running on my mac using the wine emulator. I can run Openbugs just fine by doing: wine ~/OpenBUGS312/OpenBUGS.exe In the terminal, so OpenBUGS works. When I try to run the schools example using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no log, no script, no outp...

Hi, I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat Enterprise Linux machine. Following various peoples' suggestions... This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe Within R, however, I get this: (setup the example from ?bugs, then....) R> schools.sim <- bugs(data, inits, para...

Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode), not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I tried briefly, and realized few minor differences. However, it seems to work. I wonder if anyone checked thoroughly equivale...

Hi, I'm currently working on the below codes however whenever I run it in openbugs it gives an error message saying: unknown type of logical function error pos 76. Any help would be appreciated. ## bugs code library(R2OpenBUGS) sink("C:/Users/CCF/Documents/Suzie Work/PTY Project/Waterhole Correction/ungulate.txt") cat(" model{ # hyperparameters # habitat effect...

I've run into persistent problems with OpenBUGS crashing when using BRugs .53 and .71, and am hoping someone has suggestions. There is obviously something unusual going on in my environment, but I'm at a loss as to where to begin to try to solve it. In a nutshell, what happens is that, as soon as I call "modelCheck()" in BRugs, i...

...y experience. At any rate, I have more experience with WinBUGS under Windows and would like a version of that working as well. It seems like I've read a lot on the subject and tried a lot, but haven't managed to get BUGS to work yet. The most success I've had is to install WinBUGS or OpenBUGS using this method: http://www.math.aau.dk/~slb/kurser/bayes-08/install.html What you also need to know is that you need to open Wine and add a drive. Although Z is recommended, I haven't been able to specify it, but have gotten a D drive to work, using: wine D:/opt/OpenBUGS/winbugs.exe Usin...

...d, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well. It uses the same modeling > language as BUGS. It is also better supported than OpenBUGS. > > Frank > > Bill Halteman wrote: > >> Hi All, >> >> I am trying to figure out how to use R-Coda with the output from >> OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I >> have successfully run a simple Bayes model in WinBUG...

This is slightly off-topic, but there was a discussion about MCMC a couple of weeks ago. OpenBUGS can operate from R, at least in Windows (there are some problems in Linux at the moment). The interface with R is one are that there are plans to work on: it's a bit basic at the moment. Bob -- Bob O'Hara Dept. of Mathematics and Statistics P.O. Box 68 (Gustaf H??llstr??min katu 2b)...

Dear All, I am trying to use the glmmBUGS package with OpenBUGS under Linux. Here is a short list of code I modified from the diseasemapping package document: ---------------------------------------- library(diseasemapping) data(popdata) data(casedata) model = getRates(casedata, popdata, ~age*sex, breaks=seq(0, 90, by=10) ) ontario = getSMR(popdata,model, cas...

Hi, this is the first announcement of a *developer version* of the R package BRugs, which is based on OpenBUGS 2.1.0. OpenBUGS 2.1.0 has been released earlier this week (http://mathstat.helsinki.fi/openbugs/). BRugs contains a complete OpenBUGS installation as well as R code to access OpenBUGS functionality from R. Simply install the package, load it and say ?BRugs and ?BRugsFit respectively. Sources...

.... Today, I want to ask how people are doing this in Linux? I have found a plethora of possibilities, some of which are not quite ready, some of which work only under MS Windows. Right now I just want to know "what actually works". Here's where I stand now in Fedora Core 4 Linux. 1. OpenBUGS-2.1.1 runs in Linux. I can run "linbugs" (the console version similar to the old BUGS) and also I can run--under wine--the newest version of "winbugs.exe" that is circulated with OpenBUGS. As far as I can tell, the graphical interface in wine/winbugs works in almost all elemen...

Hi, I have a strange behaviour of openBUGS and WinBUGS when I start them from R. Version: R: 2.10.1 openBUGS: 3.07 WinBUGS: 1.43 R2WinBUGS: 2.1-16 BRugs: 0.5-3 I have a model and data without initial start values. If I use the stand alone versions of openBUGS and WinBUGS I don't have any problems and I get what I want. If I use fu...

Hi there, I installed the latest OpenBUGS version (3.0.3) in program files folder but it seems that bugs use its own version of OpenBUGS. here is part of the message bugs returns ..... Welcome to BRugs running on OpenBUGS version 2.2.0 beta how can i configure BRugs to use the mine version of OpenBUGS? Cheers, SK...

...run winBUGS without having to mount a virtual desktop of any kind. I've looked through the r2winBUGS docs, and there doesn't seem to be any command(s) which I can invoke to simply use the winBUGS 'engine', and not the winBUGS windows. Yes, I know I could look at classic BUGS, or openBUGS, but neither work particularly well for my purposes (since the code I'm using makes use of a numb4er of winBUGS 'extensions' which aren't supported in other flavours of BUGS). Is this possible in any fashion? Thanks in advance...

...age is available from CRAN master already as source and in binary form for Windows and will be synced by the mirrors shortly. Note the following changes (more details in the NEWS file): BRugs works on Linux now BRugs now supports 64-bit R on Windows BRugs works with an existing installation of OpenBUGS (at least 3.2.1) instead of being distributed with the OpenBUGS library, hence the OpenBUGS installation is a requirement. Both the Linux version as well as the 64-bit version for 64-bit R on Windows are typically slower than the more native interface used for 32-bit R on Windows. Thanks to...

...age is available from CRAN master already as source and in binary form for Windows and will be synced by the mirrors shortly. Note the following changes (more details in the NEWS file): BRugs works on Linux now BRugs now supports 64-bit R on Windows BRugs works with an existing installation of OpenBUGS (at least 3.2.1) instead of being distributed with the OpenBUGS library, hence the OpenBUGS installation is a requirement. Both the Linux version as well as the 64-bit version for 64-bit R on Windows are typically slower than the more native interface used for 32-bit R on Windows. Thanks to...

I installed XCode, XQuartz and OpenBUGS on my Mac using WINE. When I tried to test my installation I received the following error. If correct, BRugs does not exist for R 2.15.1. Is there a means to get arrange this problem? Thanks Paul The following code is an example from R Help bugs: > schools.sim <- bugs(data, inits,...