emorway
2010-Dec-22 20:34 UTC
[R] adjust secondary y-axis bounds to minimize visual residuals
Hello,
I'm plotting two sets of data referenced to either the left or right y-axes.
The first, water table depth (blue circles), is plotted on the left y-axis
in reverse order (0 at the top) as this is more intuitive when thinking in
terms of depth. The second is electrical conductance (a surrogate for
salinity), and is referenced to the right y-axis. The data and plot
commands follow below.
I've been trying to figure out a way to minimize the variable called
"min_this" by changing the values in ylim_2 only, with one constraint:
ylim_2[1]>0. I'm unsure of how to stuff the code that follows the plot
commands into a loop that adjusts ylim_2 so as to minimize "min_this"?
I'm
guessing there is a function to do this?
Thanks,
Eric
library(zoo)
#example data and plotting commands follow
temp.dat<-read.table(textConnection("Well Meas_Date WTD ECgw
GW_Project_Area
Region Avg.EM.Survey.Value Avg.Soil.Paste.EC SD_EM_Survey
1 4/12/1999 1.75 2.27 LOWER-UPSTREAM US NA NA NA
1 5/11/1999 1.24 5.04 LOWER-UPSTREAM US NA NA NA
1 5/27/1999 1.27 4.45 LOWER-UPSTREAM US NA NA NA
1 6/3/1999 1.27 4.09 LOWER-UPSTREAM US 3.347069 3.126667 0.6347013
1 6/11/1999 1.52 2.84 LOWER-UPSTREAM US NA NA NA
1 6/18/1999 1.19 2.34 LOWER-UPSTREAM US NA NA NA
1 6/24/1999 1.21 2.48 LOWER-UPSTREAM US NA NA NA
1 6/30/1999 1.19 2.45 LOWER-UPSTREAM US NA NA NA
1 7/7/1999 1.59 2.47 LOWER-UPSTREAM US NA NA NA
1 7/14/1999 1.75 2.73 LOWER-UPSTREAM US NA NA NA
1 7/21/1999 1.75 2.33 LOWER-UPSTREAM US NA NA NA
1 7/28/1999 1.78 2.63 LOWER-UPSTREAM US NA NA NA
1 8/4/1999 1.37 2.25 LOWER-UPSTREAM US NA NA NA
1 8/12/1999 0.08 2.37 LOWER-UPSTREAM US 2.858553 NA 0.3560363
1 8/18/1999 2.29 2.48 LOWER-UPSTREAM US NA NA NA
1 9/4/1999 0.02 2.48 LOWER-UPSTREAM US NA NA NA
1 9/16/1999 1.93 2.45 LOWER-UPSTREAM US NA NA NA
1 10/1/1999 2.01 2.49 LOWER-UPSTREAM US NA NA NA
1 11/13/1999 1.91 2.32 LOWER-UPSTREAM US NA NA NA
1 1/4/2000 1.83 2.59 LOWER-UPSTREAM US NA NA NA
1 2/24/2000 1.93 2.83 LOWER-UPSTREAM US NA NA NA
1 3/25/2000 1.73 2.71 LOWER-UPSTREAM US NA NA NA
1 4/15/2000 1.47 3.12 LOWER-UPSTREAM US NA NA NA
1 4/28/2000 1.98 2.76 LOWER-UPSTREAM US NA NA NA
1 5/17/2000 1.80 2.92 LOWER-UPSTREAM US NA NA NA
1 5/30/2000 NA NA <NA> US 3.064330 NA 0.3970829
1 6/1/2000 1.58 2.83 LOWER-UPSTREAM US NA NA NA
1 6/6/2000 1.65 2.97 LOWER-UPSTREAM US NA NA NA
1 6/15/2000 1.85 2.65 LOWER-UPSTREAM US NA NA NA
1 6/23/2000 1.90 2.78 LOWER-UPSTREAM US NA NA NA
1 6/29/2000 1.80 2.67 LOWER-UPSTREAM US NA NA NA
1 7/6/2000 2.00 2.69 LOWER-UPSTREAM US NA NA NA
1 7/14/2000 1.97 3.46 LOWER-UPSTREAM US NA NA NA
1 7/20/2000 1.69 2.57 LOWER-UPSTREAM US NA NA NA
1 7/27/2000 1.95 3.16 LOWER-UPSTREAM US NA NA NA
1 8/2/2000 2.03 3.12 LOWER-UPSTREAM US NA NA NA
1 8/8/2000 NA NA <NA> US 3.185567 2.522467 0.3765025
1 8/11/2000 2.00 2.65 LOWER-UPSTREAM US NA NA NA
1 8/19/2000 1.95 2.50 LOWER-UPSTREAM US NA NA NA
1 9/29/2000 2.11 2.11 LOWER-UPSTREAM US NA NA NA
1 10/20/2000 2.16 2.75 LOWER-UPSTREAM US NA NA NA
1 12/1/2000 1.83 2.81 LOWER-UPSTREAM US NA NA NA
1 1/19/2001 2.01 3.01 LOWER-UPSTREAM US NA NA NA
1 3/5/2001 2.01 2.35 LOWER-UPSTREAM US NA NA NA
1 3/30/2001 2.13 2.10 LOWER-UPSTREAM US NA NA NA
1 4/21/2001 1.87 2.36 LOWER-UPSTREAM US NA NA NA
1 5/15/2001 2.00 2.37 LOWER-UPSTREAM US NA NA NA
1 5/29/2001 1.60 2.59 LOWER-UPSTREAM US NA NA NA
1 6/4/2001 NA NA <NA> US 4.233636 NA 1.3738540
1 6/7/2001 1.71 2.55 LOWER-UPSTREAM US NA NA NA
1 6/14/2001 1.83 2.75 LOWER-UPSTREAM US NA NA NA
1 6/20/2001 1.93 3.02 LOWER-UPSTREAM US NA NA NA
1 6/29/2001 1.80 2.74 LOWER-UPSTREAM US NA NA NA
1 7/6/2001 1.91 2.70 LOWER-UPSTREAM US NA NA NA
1 7/12/2001 2.04 2.46 LOWER-UPSTREAM US NA NA NA
1 7/18/2001 1.87 2.55 LOWER-UPSTREAM US NA NA NA
1 7/25/2001 1.96 2.67 LOWER-UPSTREAM US NA NA NA
1 8/2/2001 2.02 2.42 LOWER-UPSTREAM US NA NA NA
1 8/8/2001 NA NA <NA> US 2.946731 NA 0.3748240
1 8/10/2001 1.94 2.36 LOWER-UPSTREAM US NA NA NA
1 8/17/2001 1.94 0.75 LOWER-UPSTREAM US NA NA NA
1 9/1/2001 2.12 2.22 LOWER-UPSTREAM US NA NA NA
1 9/15/2001 2.15 2.35 LOWER-UPSTREAM US NA NA NA
1 9/29/2001 1.95 2.20 LOWER-UPSTREAM US NA NA NA
1 10/27/2001 1.08 1.72 LOWER-UPSTREAM US NA NA NA
1 11/17/2001 1.99 2.21 LOWER-UPSTREAM US NA NA NA
1 1/10/2002 2.01 2.31 LOWER-UPSTREAM US NA NA NA
1 2/16/2002 1.94 1.74 LOWER-UPSTREAM US NA NA NA
1 3/23/2002 2.03 2.46 LOWER-UPSTREAM US NA NA NA
1 4/13/2002 2.11 2.50 LOWER-UPSTREAM US NA NA NA
1 5/11/2002 2.11 2.54 LOWER-UPSTREAM US NA NA NA
1 5/21/2002 NA NA <NA> US 2.368000 NA 0.3235852
1 5/30/2002 2.07 2.56 LOWER-UPSTREAM US NA NA NA
1 6/6/2002 2.11 2.55 LOWER-UPSTREAM US NA NA NA
1 6/13/2002 2.03 2.66 LOWER-UPSTREAM US NA NA NA
1 6/27/2002 2.19 2.55 LOWER-UPSTREAM US NA NA NA
1 7/3/2002 2.22 2.68 LOWER-UPSTREAM US NA NA NA
1 7/11/2002 2.06 2.61 LOWER-UPSTREAM US NA NA NA
1 7/18/2002 2.23 2.58 LOWER-UPSTREAM US NA NA NA
1 7/25/2002 2.23 2.62 LOWER-UPSTREAM US NA NA NA
1 8/1/2002 2.21 2.60 LOWER-UPSTREAM US NA NA NA
1 8/8/2002 2.29 2.60 LOWER-UPSTREAM US NA NA NA
1 8/14/2002 NA NA <NA> US 1.863548 NA 0.2400621
1 8/15/2002 2.26 2.61 LOWER-UPSTREAM US NA NA NA
1 8/21/2002 2.34 2.51 LOWER-UPSTREAM US NA NA NA
1 9/6/2002 2.31 2.51 LOWER-UPSTREAM US NA NA NA
1 9/21/2002 2.25 2.55 LOWER-UPSTREAM US NA NA NA
1 10/5/2002 2.21 2.57 LOWER-UPSTREAM US NA NA NA
1 11/8/2002 2.09 2.50 LOWER-UPSTREAM US NA NA NA
1 12/23/2002 2.19 2.16 LOWER-UPSTREAM US NA NA NA
1 1/16/2003 2.23 2.15 LOWER-UPSTREAM US NA NA NA
1 3/1/2003 2.12 2.11 LOWER-UPSTREAM US NA NA NA
1 4/5/2003 2.03 1.99 LOWER-UPSTREAM US NA NA NA
1 5/2/2003 2.00 2.42 LOWER-UPSTREAM US NA NA NA
1 5/30/2003 1.66 2.09 LOWER-UPSTREAM US NA NA NA
1 6/3/2003 NA NA <NA> US 3.066333 NA 0.2926846
1 6/6/2003 1.43 2.24 LOWER-UPSTREAM US NA NA NA
1 6/12/2003 1.73 2.81 LOWER-UPSTREAM US NA NA NA
1 6/19/2003 1.51 2.97 LOWER-UPSTREAM US NA NA NA
1 7/3/2003 1.84 3.35 LOWER-UPSTREAM US NA NA NA
1 7/11/2003 2.00 2.52 LOWER-UPSTREAM US NA NA NA
1 7/17/2003 2.04 2.76 LOWER-UPSTREAM US NA NA NA
1 7/24/2003 2.02 2.40 LOWER-UPSTREAM US NA NA NA
1 7/31/2003 1.96 2.14 LOWER-UPSTREAM US NA NA NA
1 8/16/2003 2.29 1.85 LOWER-UPSTREAM US NA NA NA
1 8/20/2003 2.14 2.11 LOWER-UPSTREAM US NA NA NA
1 9/5/2003 2.03 1.45 LOWER-UPSTREAM US NA NA NA
1 10/10/2003 2.10 2.21 LOWER-UPSTREAM US NA NA NA
1 11/15/2003 1.95 1.83 LOWER-UPSTREAM US NA NA NA
1 12/22/2003 2.13 NA LOWER-UPSTREAM US NA NA NA
1 1/16/2004 2.16 2.30 LOWER-UPSTREAM US NA NA NA
1 2/13/2004 2.12 2.13 LOWER-UPSTREAM US NA NA NA
1 3/19/2004 2.02 2.11 LOWER-UPSTREAM US NA NA NA
1 4/23/2004 2.09 2.10 LOWER-UPSTREAM US NA NA NA
1 5/3/2004 1.89 2.42 LOWER-UPSTREAM US NA NA NA
1 5/17/2004 2.02 2.31 LOWER-UPSTREAM US NA NA NA
1 5/24/2004 1.97 2.58 LOWER-UPSTREAM US NA NA NA
1 5/26/2004 NA NA <NA> US 3.532614 NA 0.6329923
1 6/7/2004 1.81 2.70 LOWER-UPSTREAM US NA NA NA
1 6/14/2004 1.66 2.35 LOWER-UPSTREAM US NA NA NA
1 6/28/2004 2.10 2.70 LOWER-UPSTREAM US NA NA NA
1 7/5/2004 1.86 3.25 LOWER-UPSTREAM US NA NA NA
1 7/12/2004 2.00 2.93 LOWER-UPSTREAM US NA NA NA
1 7/19/2004 1.63 2.55 LOWER-UPSTREAM US NA NA NA
1 7/26/2004 2.01 2.65 LOWER-UPSTREAM US NA NA NA
1 8/2/2004 1.91 2.89 LOWER-UPSTREAM US NA NA NA
1 8/9/2004 2.00 2.87 LOWER-UPSTREAM US NA NA NA
1 8/17/2004 2.07 2.77 LOWER-UPSTREAM US NA NA NA
1 9/18/2004 2.18 2.67 LOWER-UPSTREAM US NA NA NA
1 10/23/2004 2.14 2.43 LOWER-UPSTREAM US NA NA NA
1 11/22/2004 2.17 2.38 LOWER-UPSTREAM US NA NA NA
1 12/20/2004 0.32 2.48 LOWER-UPSTREAM US NA NA NA
1 1/11/2005 2.16 2.44 LOWER-UPSTREAM US NA NA NA
1 2/18/2005 2.22 2.27 LOWER-UPSTREAM US NA NA NA
1 3/16/2005 2.06 2.59 LOWER-UPSTREAM US NA NA NA
1 4/9/2005 2.02 2.50 LOWER-UPSTREAM US NA NA NA
1 5/13/2005 1.96 2.62 LOWER-UPSTREAM US NA NA NA
1 6/7/2005 1.96 2.99 LOWER-UPSTREAM US NA NA NA
1 6/13/2005 1.77 2.22 LOWER-UPSTREAM US NA NA NA
1 6/20/2005 1.87 3.05 LOWER-UPSTREAM US NA NA NA
1 6/28/2005 1.76 3.50 LOWER-UPSTREAM US NA NA NA
1 7/5/2005 1.58 3.56 LOWER-UPSTREAM US NA NA NA
1 7/11/2005 1.72 3.22 LOWER-UPSTREAM US NA NA NA
1 7/19/2005 1.98 3.11 LOWER-UPSTREAM US NA NA NA
1 8/1/2005 2.14 3.02 LOWER-UPSTREAM US NA NA NA
1 8/10/2005 NA NA <NA> US 3.465650 4.032000 0.3743813
1 8/16/2005 1.79 3.00 LOWER-UPSTREAM US NA NA NA
1 10/21/2005 4.34 1.07 LOWER-UPSTREAM US NA NA NA
1 11/23/2005 2.08 1.08 LOWER-UPSTREAM US NA NA NA
1 12/21/2005 1.64 2.54 LOWER-UPSTREAM US NA NA NA
1 1/13/2006 2.05 2.01 LOWER-UPSTREAM US NA NA NA
1 2/9/2006 2.10 1.73 LOWER-UPSTREAM US NA NA NA
1 3/13/2006 2.03 2.22 LOWER-UPSTREAM US NA NA NA
1 5/22/2006 1.62 2.38 LOWER-UPSTREAM US NA NA NA
1 5/29/2006 1.61 2.29 LOWER-UPSTREAM US NA NA NA
1 6/13/2006 1.53 2.39 LOWER-UPSTREAM US NA NA NA
1 6/19/2006 1.77 2.49 LOWER-UPSTREAM US NA NA NA
1 6/20/2006 1.86 NA LOWER-UPSTREAM US NA NA NA
1 6/26/2006 1.89 3.12 LOWER-UPSTREAM US NA NA NA
1 7/3/2006 1.90 2.95 LOWER-UPSTREAM US NA NA NA
1 7/11/2006 1.26 2.49 LOWER-UPSTREAM US NA NA NA
1 7/18/2006 1.83 2.86 LOWER-UPSTREAM US NA NA NA
1 7/31/2006 1.92 2.89 LOWER-UPSTREAM US NA NA NA
1 8/15/2006 2.00 1.87 LOWER-UPSTREAM US NA NA NA
1 9/22/2006 2.07 1.62 LOWER-UPSTREAM US NA NA NA
1 11/5/2006 1.92 1.67 LOWER-UPSTREAM US NA NA NA
1 12/18/2006 2.03 1.66 LOWER-UPSTREAM US NA NA NA
1 5/24/2007 1.49 NA LOWER-UPSTREAM US NA NA NA
1 10/6/2007 2.13 NA LOWER-UPSTREAM US NA NA NA
1 12/16/2007 2.03 1.36 LOWER-UPSTREAM US NA NA NA
1 1/18/2008 2.07 1.73 LOWER-UPSTREAM US NA NA NA
1 4/19/2008 1.92 1.91 LOWER-UPSTREAM US NA NA NA
1 3/18/2010 0.61 3.20 LOWER-UPSTREAM US NA NA NA
1 5/24/2010 2.04 2.22 LOWER-UPSTREAM US NA NA NA"),header=T)
closeAllConnections()
plot(as.Date(temp.dat$Meas_Date,"%m/%d/%Y"),temp.dat$WTD,xlim=c(as.Date("1999-01-01"),as.Date("2005-11-01")),ylim=rev(c(0,max(na.omit(temp.dat$WTD))+1)),pch=19,lwd=1.5,col="blue",cex=0.5,xlab="",ylab="",xaxt="n",type="p",las=1)
par(new=T)
plot(as.Date(temp.dat$Meas_Date,"%m/%d/%Y"),temp.dat$Avg.EM.Survey.Value,xlim=c(as.Date("1999-01-01"),as.Date("2005-11-01")),ylim=c(floor(min(range(na.omit(temp.dat$Avg.EM.Survey.Value))[1],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[1])),ceiling(max(range(na.omit(temp.dat$Avg.EM.Survey.Value))[2],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[2]))),xlab="",ylab="WTD
(m)",xaxt="n",yaxt="n",pch=15,col="darkgreen",cex=0.75)
axis(side=4,at=seq(floor(min(range(na.omit(temp.dat$Avg.EM.Survey.Value))[1],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[1])),ceiling(max(range(na.omit(temp.dat$Avg.EM.Survey.Value))[2],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[2])),by=1),labels=seq(floor(min(range(na.omit(temp.dat$Avg.EM.Survey.Value))[1],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[1])),ceiling(max(range(na.omit(temp.dat$Avg.EM.Survey.Value))[2],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[2])),by=1),las=1)
#the current limits of the left and right y-axes
ylim_1<-rev(c(0,max(na.omit(temp.dat$WTD))+1))
ylim_2<-c(floor(min(range(na.omit(temp.dat$Avg.EM.Survey.Value))[1],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[1])),ceiling(max(range(na.omit(temp.dat$Avg.EM.Survey.Value))[2],range(na.omit(temp.dat$Avg.Soil.Paste.EC))[2])))
#solve for "x", the coeffs to map the right
#referenced values to their left-axis equivalent
A<-matrix(c(ylim_2,1,1),nrow=2,ncol=2,byrow=F)
RHS<-matrix(ylim_1,nrow=2,ncol=1,byrow=T)
x<-solve(A,RHS)
#interpolate missing WTD values
temp.dat$WTD<-na.approx(temp.dat$WTD,as.numeric(as.Date(temp.dat$Meas_Date,"%m/%d/%Y")))
#map the right-referenced values to their
#corresponding left-axis values
temp.dat.mapped<-x[1,1]*temp.dat$Avg.EM.Survey.Value+x[2,1]
#calculate the resids between green squares and blue circles
resids<-na.omit(data.frame(Col1=temp.dat$WTD,Col2=temp.dat.mapped,SumSqrDiff=(temp.dat$WTD-temp.dat.mapped)^2))
#quantity to be minimized
min_this<-sum(resids$SumSqrDiff)
--
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