I'm using the following model to do an analysis faicout <- glm(cbind(events,patnums-events) ~ as.factor(treat) + as.factor(numtrial), family = binomial ) Is this example there are 4 treatments . In the glm object I can find the contrasts of the main treats vs the first i.e. 2v1, 3v1 and 4v1 ... however I would like to get the complete set including 3v2, 4v2, and 4v3 ... along with the Std. Errors of all contrasts. I've tried the contrasts argument of glm and attempted to use model.matrix.default but with no luck. Any suggestions how to get all treat contrasts with SE's? Thanks J ==============================Dr. Jim Maas University of East Anglia [[alternative HTML version deleted]]
Jim,>> In the glm object I can find the contrasts of the main treats vs the >> first i.e. 2v1, 3v1 and >> 4v1 ... however I would like to get the complete set including 3v2, 4v2, >> and 4v3 ... along with >> the Std. Errors of all contrasts.Your best all round approach would be to use the multcomp package. In particular, look at ?glht ?summary.glht ?contrMat Regards, Mark. -- View this message in context: http://r.789695.n4.nabble.com/getting-all-contrasts-from-glm-tp3007027p3007421.html Sent from the R help mailing list archive at Nabble.com.