Christian Hennig
2010-Sep-01 14:09 UTC
[R] Rd-file error: non-ASCII input and no declared encoding
Dear list,
I came across the following error for three of my newly written Rd-files:
non-ASCII input and no declared encoding
I can't make sense of this.
Below I copied in one of the three files.
Can anybody please tell me what's wrong with it?
Thank you,
Christian
\name{tetragonula}
\alias{tetragonula}
\alias{tetragonula.coord}
\docType{data}
% \non_function{}
\title{Microsatellite genetic data of Tetragonula bees}
\description{
Genetic data for 236 Tetragonula (Apidae) bees from Australia
and Southeast Asia, see Franck et al. (2004). The data give pairs of
alleles (codominant markers) for 13 microsatellite loci.
}
\usage{data(tetragonula)}
\format{
Two objects are generated:
\describe{
\item{tetragonula}{A data frame with 236 observations and 13 string
variables. Strings consist of six digits each. The
format is derived from the data format used by the software GENEPOP
(Rousset 2010). Alleles have a three digit code, so a value of
\code{"258260"} on variable V10 means that on locus 10 the two
alleles
have codes 258 and 260. \code{"000"} refers to missing values.}
\item{tetragonula.coord}{a 236*2 matrix. Coordinates of locations of
individuals in decimal format, i.e. the first number is latitude
(negative values are South), with minutes and seconds
converted to fractions. The second number is longitude (negative
values are West).}
}
}
\source{
Franck, P., E. Cameron, G. Good, J.-Y. Rasplus, and B. P. Oldroyd
(2004) Nest architecture and genetic differentiation in a species
complex of Australian stingless bees. \emph{Mol. Ecol.} 13, 2317?2331.
Rousset, F. (2010) Genepop 4.0 for Windows and Linux.
\url{http://kimura.univ-montp2.fr/~rousset/Genepop.pdf}
}
\details{
Reads from example data file \code{Heterotrigona_indoFO.txt}.
}
\examples{
data(tetragonula)
}
\keyword{datasets}
*** --- ***
Christian Hennig
University College London, Department of Statistical Science
Gower St., London WC1E 6BT, phone +44 207 679 1698
chrish at stats.ucl.ac.uk, www.homepages.ucl.ac.uk/~ucakche
Gavin Simpson
2010-Sep-01 14:23 UTC
[R] Rd-file error: non-ASCII input and no declared encoding
On Wed, 2010-09-01 at 15:09 +0100, Christian Hennig wrote:> Dear list, > > I came across the following error for three of my newly written Rd-files: > non-ASCII input and no declared encodingI'm not sure, but is it the m- or n-dash character for the page range in the \source{} section? 2317?2331 ^^^ replace it with 2317-2331 and see if it helps. HTH G> I can't make sense of this. > > Below I copied in one of the three files. > Can anybody please tell me what's wrong with it? > > Thank you, > Christian > > \name{tetragonula} > \alias{tetragonula} > \alias{tetragonula.coord} > \docType{data} > % \non_function{} > \title{Microsatellite genetic data of Tetragonula bees} > \description{ > Genetic data for 236 Tetragonula (Apidae) bees from Australia > and Southeast Asia, see Franck et al. (2004). The data give pairs of > alleles (codominant markers) for 13 microsatellite loci. > } > \usage{data(tetragonula)} > \format{ > Two objects are generated: > \describe{ > \item{tetragonula}{A data frame with 236 observations and 13 string > variables. Strings consist of six digits each. The > format is derived from the data format used by the software GENEPOP > (Rousset 2010). Alleles have a three digit code, so a value of > \code{"258260"} on variable V10 means that on locus 10 the two alleles > have codes 258 and 260. \code{"000"} refers to missing values.} > \item{tetragonula.coord}{a 236*2 matrix. Coordinates of locations of > individuals in decimal format, i.e. the first number is latitude > (negative values are South), with minutes and seconds > converted to fractions. The second number is longitude (negative > values are West).} > } > } > \source{ > Franck, P., E. Cameron, G. Good, J.-Y. Rasplus, and B. P. Oldroyd > (2004) Nest architecture and genetic differentiation in a species > complex of Australian stingless bees. \emph{Mol. Ecol.} 13, 2317?2331. > > Rousset, F. (2010) Genepop 4.0 for Windows and Linux. > \url{http://kimura.univ-montp2.fr/~rousset/Genepop.pdf} > } > \details{ > Reads from example data file \code{Heterotrigona_indoFO.txt}. > } > > \examples{ > data(tetragonula) > } > \keyword{datasets} > > > *** --- *** > Christian Hennig > University College London, Department of Statistical Science > Gower St., London WC1E 6BT, phone +44 207 679 1698 > chrish at stats.ucl.ac.uk, www.homepages.ucl.ac.uk/~ucakche > ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.-- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Duncan Murdoch
2010-Sep-01 14:26 UTC
[R] Rd-file error: non-ASCII input and no declared encoding
On 01/09/2010 10:09 AM, Christian Hennig wrote:> Dear list, > > I came across the following error for three of my newly written Rd-files: > non-ASCII input and no declared encoding >I don't think the problem survived emailing, at least I didn't see it. You can display all the non-ASCII characters using tools::showNonASCII( readLines(f)) where f contains the filename to check. (What I'd suspect would be the quote marks. In the original, are they directional quotes? Those aren't ASCII.) Duncan Murdoch> I can't make sense of this. > > Below I copied in one of the three files. > Can anybody please tell me what's wrong with it? > > Thank you, > Christian > > \name{tetragonula} > \alias{tetragonula} > \alias{tetragonula.coord} > \docType{data} > % \non_function{} > \title{Microsatellite genetic data of Tetragonula bees} > \description{ > Genetic data for 236 Tetragonula (Apidae) bees from Australia > and Southeast Asia, see Franck et al. (2004). The data give pairs of > alleles (codominant markers) for 13 microsatellite loci. > } > \usage{data(tetragonula)} > \format{ > Two objects are generated: > \describe{ > \item{tetragonula}{A data frame with 236 observations and 13 string > variables. Strings consist of six digits each. The > format is derived from the data format used by the software GENEPOP > (Rousset 2010). Alleles have a three digit code, so a value of > \code{"258260"} on variable V10 means that on locus 10 the two alleles > have codes 258 and 260. \code{"000"} refers to missing values.} > \item{tetragonula.coord}{a 236*2 matrix. Coordinates of locations of > individuals in decimal format, i.e. the first number is latitude > (negative values are South), with minutes and seconds > converted to fractions. The second number is longitude (negative > values are West).} > } > } > \source{ > Franck, P., E. Cameron, G. Good, J.-Y. Rasplus, and B. P. Oldroyd > (2004) Nest architecture and genetic differentiation in a species > complex of Australian stingless bees. \emph{Mol. Ecol.} 13, 2317?2331. > > Rousset, F. (2010) Genepop 4.0 for Windows and Linux. > \url{http://kimura.univ-montp2.fr/~rousset/Genepop.pdf} > } > \details{ > Reads from example data file \code{Heterotrigona_indoFO.txt}. > } > > \examples{ > data(tetragonula) > } > \keyword{datasets} > > > *** --- *** > Christian Hennig > University College London, Department of Statistical Science > Gower St., London WC1E 6BT, phone +44 207 679 1698 > chrish at stats.ucl.ac.uk, www.homepages.ucl.ac.uk/~ucakche > ------------------------------------------------------------------------ > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >