search for: genepop

Dear list, Does there exist R routines for reading output files from Genepop? (GENEPOP is a population genetics software package by Raymond & Rousset; http://genepop.curtin.edu.au/ ) I find several R packages that contain function for writing Genepop input files, but non that does the reverse. Regards, hans [[alternative HTML version deleted]]

I'm trying to use the package ARES to produce allelic richness estimates with extrapolation beyond the sample size. I've begun by testing the program with the butterfly_borneo data provided with the package, but I seem to be having a problem with the read.genepop function. Below, I've included my R code along with the error I receive after trying to read the genepop file. I'm not familiar with this error message and would appreciate any comments on how to resolve this problem, or interpret the error. Thank you, Adam > path <- system.file (...

...13 microsatellite loci. } \usage{data(tetragonula)} \format{ Two objects are generated: \describe{ \item{tetragonula}{A data frame with 236 observations and 13 string variables. Strings consist of six digits each. The format is derived from the data format used by the software GENEPOP (Rousset 2010). Alleles have a three digit code, so a value of \code{"258260"} on variable V10 means that on locus 10 the two alleles have codes 258 and 260. \code{"000"} refers to missing values.} \item{tetragonula.coord}{a 236*2 matrix. Coordinates of locat...

Hello, Can anybody tell me what the format of the input data file should be for this R function? Poor package documentation. Thanks, Matt ******************************************************** Matthew D. MacManes PhD Student UC- Berkeley Department of Integrative Biology Museum of Vertebrate Zoology 3101 VLSB #3140 Berkeley, CA 94720 (510)642-7782 EMAIL: macmanes@berkeley.edu WEBSITE: