CRAN (and crantastic) updates this week
New packages
------------
* DCGL (1.0)
Bao-Hong Liu
http://crantastic.org/packages/DCGL
Functions for basic differential coexpression analyses: gene
filtering, link filtering, DCG (Differentially-Coexpressed Gene)
identification and DCL (Differentially-Coexpressed Links)
identification.Two algorithms,named DCP and DCe, are provided for
DCG-identification or DCG and DCL-identification.
* fmsb (0.11)
Minato Nakazawa
http://crantastic.org/packages/fmsb
Several utility functions for the book entitled "Practices of Medical
and Health Data Analysis using R" (Pearson Education Japan, 2007)
* IniStatR (1.0.0)
Frederic Bertrand
http://crantastic.org/packages/IniStatR
This packages provides datasets for the book "Initiation ? la
Statistique avec R", Dunod, 2010.
* isva (1.0)
Unknown
http://crantastic.org/packages/isva
Independent Surrogate Variable Analysis is a general algorithm for
feature selection in the presence of potentially confounding
factors.
* mritc (0.3-1)
Dai Feng
http://crantastic.org/packages/mritc
Various methods for MRI tissue classification.
* mutoss (0.1-1)
Kornelius Rohmeyer
http://crantastic.org/packages/mutoss
The Mutoss package and accompanying mutossGUI package are designed to
ease the application and comparison of multiple hypothesis testing
procedures.
* mutossGUI (0.1-2)
Kornelius Rohmeyer
http://crantastic.org/packages/mutossGUI
A graphical user interface for the MuToss Project
* refund (0.1-0)
Lei Huang
http://crantastic.org/packages/refund
Functions for regression with functional data. The principal methods
currently implemented are (1) functional-response/scalar-predictor
regression by penalized OLS or GLS; and (2) functional principal
component regression for scalar responses and functional predictors.
* soiltexture (1.0)
Julien MOEYS
http://crantastic.org/packages/soiltexture
"The Soil Texture Wizard" is a set of R functions designed
to produce
texture triangles (also called texture plots, texture diagrams,
texture ternary plots), classify and transform soil textures data.
These functions virtually allows to plot any soil texture triangle /
classification into any triangle geometry (isosceles, right-angled
triangles, etc.). This set of function is expected to be useful to
people using soil textures data from different soil texture
classification or different particle size systems. Several texture
triangles are predefined: USDA; FAO (which is also the triangle for
the soil map of Europe); Aisne (France); GEPPA (France); German
triangle (Bodenkundliche Kartieranleitung 1994); Soil Survey of
England and Wales (UK); Australian triangle; Belgian triangle;
Canadian triangle; ISSS triangle; Romanian traingle. The Soil
Texture Wizard is initially develloped from the functions
'soil.texture()' from the package 'plotrix' by Jim Lemon et
al.
* TunePareto (1.0)
Hans Kestler
http://crantastic.org/packages/TunePareto
Generic methods for parameter tuning of classification algorithms
using multiple scoring functions
Updated packages
----------------
ade4 (1.4-16), adlift (1.2-3), AICcmodavg (1.08), aqp (0.94-1), aspace
(2.5), aspace (2.4), BioStatR (1.0.2), bnlearn (2.2), caret (4.54),
caret (4.53), clustTool (1.6.5), coarseDataTools (0.3),
constrainedKriging (0.1.2), DEMEtics (0.8.1), emdbook (1.2.2.1), FitAR
(1.80), fpc (2.0-2), futile.paradigm (1.0.1), futile.paradigm (1.0.2),
gamlss (4.0-3), gamlss.add (4.0-1), gamlss.data (4.0-1), genoPlotR
(0.5.1), GEOmap (1.5-9), GEVcdn (1.0.2), GillespieSSA (0.5-4), gllm
(0.33), glmperm (1.0-3), gRapHD (0.1.7), HFWutils (0.9.4.2010.08.20),
hts (1.3), HWEintrinsic (1.1.1), igraph (0.5.4-1), intervals (0.13.3),
ipw (1.0-6), laeken (0.1.3), LDheatmap (0.2-9), lme4 (0.999375-35),
lmPerm (1.1-2), lordif (0.1-6), lpSolveAPI (5.5.2.0), magma (0.2.1-3),
MCMCglmm (2.06), mondate (0.9.08.15), mondate (0.9.08.19.02), mratios
(1.3.13), nacopula (0.4-3), nleqslv (1.7), nlt (2.1-1), NMF (0.5),
pROC (1.3.1), qpcR (1.3-1), qpcR (1.3-0), qtl (1.18-7), qualityTools
(1.01), R.utils (1.5.0), r4ss (1.10), rAverage (0.3-3), rbounds (0.5),
RcmdrPlugin.HH (1.1-26), robCompositions (1.4.3), RPMG (2.0-0), RSEIS
(2.4-4), rTOFsPRO (1.2), Runiversal (1.0.1), rwm (1.52), sdcMicro
(2.6.5), sem (0.9-21), simFrame (0.3.2), simFrame (0.3.3), simFrame
(0.3.1), spdep (0.5-19), spikeslab (1.1.1), TGUICore (0.9.12),
TGUITeaching (0.9.12), tm (0.5-4), traitr (0.10), TraMineR (1.6-1),
TSAgg (0.2-0), vegan (1.17-4), VIM (1.4.1), wq (0.2-5)
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