Nathan Stephens
2010-Jan-18 19:55 UTC
[R] R jobs keep hanging linux server despite mem.limits modifcations
My group is working with datasets between 100 Mb and 1 GB in size, using multiple log ins. From the documentation, it appears that vsize is limited to 2^30-1, which tends to prove too restrictive for our use. When we drop that restriction (set vsize = NA) we end up hanging the server, which requires a restart. Is there any way to increase the memory limits on R while keeping our jobs from hanging? Having to restart the server is a major inconvenience, second only to memory limitations in R.> mem.limits()nsize vsize 100000000 NA> mem.limits(vsize=2^30)nsize vsize 100000000 1073741824> mem.limits(vsize=2^31)nsize vsize 100000000 1073741824 Warning message: In structure(.Internal(mem.limits(as.integer(nsize), as.integer(vsize))), : NAs introduced by coercion --Nathan [[alternative HTML version deleted]]