Hi Mark,
What command did you use exactly to install the package ?
The following blog post by Yu-Sung Su
http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html
indicates that some configure.args might need to be set to
succesfully install the package (at least on Fedora 10)
install.packages("rjags",
configure.args="--with-jags-include=/usr/local/include/JAGS
--with-jags-lib=/usr/local/lib/JAGS
--with-jags-modules=/usr/local/lib/JAGS/modules")
The fact that in the error message complains some files are
not found might have to do with one of the appropriate paths
not being picked up.
HTH,
Tobias
markleeds at verizon.net wrote:> Hi All: I get the following error when trying to install the rjags
package.
> I've installed the
> jags software and I'm using Fedora 10.0 and my sessionInfo is at the
bottom
> of this email.
> I'm also sorry if this email ends up having control A's all over
it. I still
> haven't figured how to fix that. Thanks.
> [1] "LOADING MASS LIBRARY"
> checking for prefix by checking for jags... /usr/bin/jags
> configure: creating ./config.status
> config.status: creating src/Makevars
> configure: creating ./config.status
> config.status: creating src/Makevars
> config.status: creating R/unix/zzz.R
> g++ -m32 -I/usr/include/R -I/usr/include/JAGS -I/usr/local/include? ? ?
> -fpic? -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386
-mtune=generic
> -fasynchronous-unwind-tables -c jags.cc -o jags.o
> jags.cc:8:21: error Console.h No such file or directory
> jags.cc:9:24: error: util/naing.h: No such file or directory
> jags.cc:20: error: 'SArray' was not declared in this scope
> jags.cc:21: error expected ',' or ';' before { token
> R version 2.9.0 (2009-04-17)
> i386-redhat-linux-gnu
> locale:
>
LC_CTYPE=en_US.utf8;LC_NUMERIC=C;LC_TIME=en_US.utf8;LC_COLLATE=en_US.utf8;LC
>
_MONETARY=C;LC_MESSAGES=en_US.utf8;LC_PAPER=en_US.utf8;LC_NAME=C;LC_ADDRESS>
C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.utf8;LC_IDENTIFICATION=C
> attached base packages:
> [1] datasets? utils? ? ? ? stats? ? ? ? graphics? grDevices methods?
?
> base? ? ? ?
> other attached packages:
> ? [1] gsubfn_0.3-8? ? ? ? ? ? proto_0.3-8? ? ? ? ? ? ?
latticeExtra_0.5-4
> RColorBrewer_1.0-2 filehash_2.0-1? ? ? ? reshape_0.8.2? ? ? ? ?
> plyr_0.1.8? ? ? ? ? ? ? ? rOpenBUGS_0.0-1? ? ? caret_4.19? ? ? ? ? ? ?
> [10] dyn_0.2-8? ? ? ? ? ? ? ? ? coda_0.13-4? ? ? ? ? ? ?
> lattice_0.17-22? ? ? zoo_1.5-5? ? ? ? ? ? ? ? ? chron_2.3-30? ? ? ? ?
?
> MASS_7.2-46? ? ? ? ? ?
> loaded via a namespace (and not attached):
> [1] grid_2.9.0
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