R help - Jul 2009 - R package creation: 'show' extension not imported correctly

Dear List,

I have a problem related to R package creation.

I extended the 'show' method to cover a new class
with the following lines in the zzz.R file in the R directory while creating
an R package.
>setClass("rpa", contains="list")
>show.rpa <- function (...) {cat("rpa object \n")}
The corresponding lines were also added to NAMESPACE file:
>importMethodsFrom(methods,show)
>exportClasses(rpa)
>S3method(show,rpa)
The CMD check and CMD build do not produce warning messages related to this
issue (only warnings are about missing .Rd files).

After installing the package ('test' is the package name) I start R and
require the new package:
> require(test)
Loading required package: test
Warning message:
found an S4 version of 'show' so it has not been imported correctly


So it seems that the show method is S4 version although in the package
definition it is an S3 version. I would prefer not defining an S4 version
for show at this point, the main goal at the moment is simply to get the
package working and S3 seems to provide a quick-and-dirty way for this.

Any solutions / workarounds would be appreciated.

thanks in advance
Leo

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On 20/07/2009 7:53 PM, L L wrote:
> Dear List,
> 
> I have a problem related to R package creation.
> 
> I extended the 'show' method to cover a new class
> with the following lines in the zzz.R file in the R directory while
creating
> an R package.
> 
>> setClass("rpa", contains="list")
>> show.rpa <- function (...) {cat("rpa object \n")}
> 
> The corresponding lines were also added to NAMESPACE file:
> 
>> importMethodsFrom(methods,show)
>> exportClasses(rpa)
>> S3method(show,rpa)
> 
> The CMD check and CMD build do not produce warning messages related to this
> issue (only warnings are about missing .Rd files).
> 
> After installing the package ('test' is the package name) I start R
and
> require the new package:
> 
>> require(test)
> Loading required package: test
> Warning message:
> found an S4 version of 'show' so it has not been imported correctly
> 
> 
> So it seems that the show method is S4 version although in the package
> definition it is an S3 version. I would prefer not defining an S4 version
> for show at this point, the main goal at the moment is simply to get the
> package working and S3 seems to provide a quick-and-dirty way for this.
> 
> Any solutions / workarounds would be appreciated.
If you only want to use S3, then don't use setClass (or anything else in 
the methods package).  If you're using setClass, use setMethod to define 
an S4 method.  I don't know if methods makes an attempt to support mixed 
styles as you used, but it really looks like a bad idea.

Duncan Murdoch
> 
> thanks in advance
> Leo
> 
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> 
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