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Yong Wang

2009-Feb-05 09:22 UTC

[R] UNIX Installation of package "systemfit" fails

Dear list
I am trying to install the systemfit package under unix,

install.packages(systemfit)

the installation failed. I am attaching the error and version
information below,
(if dependencies=TRUE, much more error)
any help appreciated

best,
yong

====================================================================>
install.packages("systemfit")
Warning in install.packages("systemfit") :
  argument 'lib' is missing: using
'/usr/home/d/068/meta/R/x86_64-unknown-linux-gnu-library/2.7'
--- Please select a CRAN mirror for use in this session ---
CRAN mirror

 1: Argentina                   2: Australia
 3: Austria                     4: Belgium
 5: Brazil (PR)                 6: Brazil (RJ)
 7: Brazil (SP 1)               8: Brazil (SP 2)
 9: Canada (BC)                10: Canada (ON)
11: Chile                      12: China
13: Croatia                    14: Denmark
15: France (Toulouse)          16: France (Lyon)
17: France (Paris)             18: Germany (Goettingen)
19: Germany (Muenchen)         20: Iran
21: Ireland                    22: Italy (Milano)
23: Italy (Padua)              24: Italy (Palermo)
25: Japan (Aizu)               26: Japan (Tokyo)
27: Japan (Tsukuba)            28: Korea
29: Mexico                     30: Netherlands (Amsterdam 2)
31: Netherlands (Utrecht)      32: New Zealand
33: Norway                     34: Poland (Oswiecim)
35: Poland (Wroclaw)           36: Portugal
37: Russia                     38: Singapore 1
39: Singapore 2                40: Slovenia (Ljubljana)
41: South Africa               42: Spain (Madrid)
43: Sweden                     44: Switzerland
45: Taiwan (Taichung)          46: Taiwan (Taipeh)
47: Thailand                   48: Turkey
49: UK (Bristol)               50: USA (CA 1)
51: USA (CA 2)                 52: USA (IA)
53: USA (MI)                   54: USA (MO)
55: USA (NC)                   56: USA (OH)
57: USA (PA 1)                 58: USA (PA 2)
59: USA (TX 1)                 60: USA (TX 2)
61: USA (WA)

Selection: 57
also installing the dependencies ?zoo?, ?Matrix?, ?car?, ?lmtest?

trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/zoo_1.5-4.tar.gz'
Content type 'application/x-gzip' length 609057 bytes (594 Kb)
opened URL
=================================================downloaded 594 Kb

trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Matrix_0.999375-20.tar.gz'
Content type 'application/x-gzip' length 1954872 bytes (1.9 Mb)
opened URL
=================================================downloaded 1.9 Mb

trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/car_1.2-12.tar.gz'
Content type 'application/x-gzip' length 220728 bytes (215 Kb)
opened URL
=================================================downloaded 215 Kb

trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/lmtest_0.9-22.tar.gz'
Content type 'application/x-gzip' length 191099 bytes (186 Kb)
opened URL
=================================================downloaded 186 Kb

trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/systemfit_1.0-8.tar.gz'
Content type 'application/x-gzip' length 727116 bytes (710 Kb)
opened URL
=================================================downloaded 710 Kb

ERROR: failed to lock directory
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7' for
modifying
Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
ERROR: failed to lock directory
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7' for
modifying
Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
ERROR: failed to lock directory
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7' for
modifying
Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
ERROR: failed to lock directory
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7' for
modifying
Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
ERROR: failed to lock directory
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7' for
modifying
Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'

The downloaded packages are in
        /tmp/RtmpJ28hPv/downloaded_packages
Warning messages:
1: In install.packages("systemfit") :
  installation of package 'zoo' had non-zero exit status
2: In install.packages("systemfit") :
  installation of package 'Matrix' had non-zero exit status
3: In install.packages("systemfit") :
  installation of package 'car' had non-zero exit status
4: In install.packages("systemfit") :
  installation of package 'lmtest' had non-zero exit status
5: In install.packages("systemfit") :
  installation of package 'systemfit' had non-zero exit
status>
>
>
> version               _
platform       x86_64-unknown-linux-gnu
arch           x86_64
os             linux-gnu
system         x86_64, linux-gnu
status
major          2
minor          7.0
year           2008
month          04
day            22
svn rev        45424
language       R
version.string R version 2.7.0 (2008-04-22)

Uwe Ligges

2009-Feb-05 11:01 UTC

head link

[R] UNIX Installation of package "systemfit" fails

Please read your output which tells you several times:

"Try removing 
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'"


Uwe Ligges



Yong Wang wrote:> Dear list
> I am trying to install the systemfit package under unix,
> 
> install.packages(systemfit)
> 
> the installation failed. I am attaching the error and version
> information below,
> (if dependencies=TRUE, much more error)
> any help appreciated
> 
> best,
> yong
> 
>
====================================================================>>
install.packages("systemfit")
> Warning in install.packages("systemfit") :
>   argument 'lib' is missing: using
> '/usr/home/d/068/meta/R/x86_64-unknown-linux-gnu-library/2.7'
> --- Please select a CRAN mirror for use in this session ---
> CRAN mirror
> 
>  1: Argentina                   2: Australia
>  3: Austria                     4: Belgium
>  5: Brazil (PR)                 6: Brazil (RJ)
>  7: Brazil (SP 1)               8: Brazil (SP 2)
>  9: Canada (BC)                10: Canada (ON)
> 11: Chile                      12: China
> 13: Croatia                    14: Denmark
> 15: France (Toulouse)          16: France (Lyon)
> 17: France (Paris)             18: Germany (Goettingen)
> 19: Germany (Muenchen)         20: Iran
> 21: Ireland                    22: Italy (Milano)
> 23: Italy (Padua)              24: Italy (Palermo)
> 25: Japan (Aizu)               26: Japan (Tokyo)
> 27: Japan (Tsukuba)            28: Korea
> 29: Mexico                     30: Netherlands (Amsterdam 2)
> 31: Netherlands (Utrecht)      32: New Zealand
> 33: Norway                     34: Poland (Oswiecim)
> 35: Poland (Wroclaw)           36: Portugal
> 37: Russia                     38: Singapore 1
> 39: Singapore 2                40: Slovenia (Ljubljana)
> 41: South Africa               42: Spain (Madrid)
> 43: Sweden                     44: Switzerland
> 45: Taiwan (Taichung)          46: Taiwan (Taipeh)
> 47: Thailand                   48: Turkey
> 49: UK (Bristol)               50: USA (CA 1)
> 51: USA (CA 2)                 52: USA (IA)
> 53: USA (MI)                   54: USA (MO)
> 55: USA (NC)                   56: USA (OH)
> 57: USA (PA 1)                 58: USA (PA 2)
> 59: USA (TX 1)                 60: USA (TX 2)
> 61: USA (WA)
> 
> Selection: 57
> also installing the dependencies ?zoo?, ?Matrix?, ?car?, ?lmtest?
> 
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/zoo_1.5-4.tar.gz'
> Content type 'application/x-gzip' length 609057 bytes (594 Kb)
> opened URL
> =================================================> downloaded 594 Kb
> 
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Matrix_0.999375-20.tar.gz'
> Content type 'application/x-gzip' length 1954872 bytes (1.9 Mb)
> opened URL
> =================================================> downloaded 1.9 Mb
> 
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/car_1.2-12.tar.gz'
> Content type 'application/x-gzip' length 220728 bytes (215 Kb)
> opened URL
> =================================================> downloaded 215 Kb
> 
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/lmtest_0.9-22.tar.gz'
> Content type 'application/x-gzip' length 191099 bytes (186 Kb)
> opened URL
> =================================================> downloaded 186 Kb
> 
> trying URL
'http://lib.stat.cmu.edu/R/CRAN/src/contrib/systemfit_1.0-8.tar.gz'
> Content type 'application/x-gzip' length 727116 bytes (710 Kb)
> opened URL
> =================================================> downloaded 710 Kb
> 
> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
> 
> The downloaded packages are in
>         /tmp/RtmpJ28hPv/downloaded_packages
> Warning messages:
> 1: In install.packages("systemfit") :
>   installation of package 'zoo' had non-zero exit status
> 2: In install.packages("systemfit") :
>   installation of package 'Matrix' had non-zero exit status
> 3: In install.packages("systemfit") :
>   installation of package 'car' had non-zero exit status
> 4: In install.packages("systemfit") :
>   installation of package 'lmtest' had non-zero exit status
> 5: In install.packages("systemfit") :
>   installation of package 'systemfit' had non-zero exit status
>>
>>
>> version
>                _
> platform       x86_64-unknown-linux-gnu
> arch           x86_64
> os             linux-gnu
> system         x86_64, linux-gnu
> status
> major          2
> minor          7.0
> year           2008
> month          04
> day            22
> svn rev        45424
> language       R
> version.string R version 2.7.0 (2008-04-22)
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Peter Dalgaard

2009-Feb-05 11:02 UTC

head link

[R] UNIX Installation of package "systemfit" fails

Yong Wang wrote:> Dear list
> I am trying to install the systemfit package under unix,
> 
> install.packages(systemfit)
> 
> the installation failed. I am attaching the error and version
> information below,
> (if dependencies=TRUE, much more error)
> any help appreciated
....> ERROR: failed to lock directory
> '/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7'
for
> modifying
> Try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'
So, did you try removing
'/usr/home/d/068/wangyong/R/x86_64-unknown-linux-gnu-library/2.7/00LOCK'

?


If you didn't, you should, if you did, you should have said so...




-- 
   O__  ---- Peter Dalgaard             ?ster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)              FAX: (+45) 35327907

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