Hello I'm writing an example PCA analysis for some students. I've done PCA on a 2-column matrix to show it at the most simple form (a rotation of two axes). I can't, however, figure out how to plot the rotated axes as lines over top of the original data plotted on the x-y. Does anyone know how to do this? It will be a good way to show how the rotated axes describing the most variation compared to the original axes. I've used the princomp function, and here's how I set up the data. library(MASS) Sigma<-matrix(c(10,3,3,2),2,2) dat<-mvrnorm(n=60, mu=c(12,13), Sigma) plot(dat, xlab="x", ylab="y") pc.ex<-princomp(dat) Thanks in advance. Gareth Campbell PhD Candidate The University of Auckland P +649 815 3670 M +6421 256 3511 E gareth.campbell@esr.cri.nz gcam032@gmail.com [[alternative HTML version deleted]]