Hi all,
I'm wondering if you know a function that allow me to scan through a whole
text file, extracting words start with "rs".
For example, below is format of the text file, I would like to extract those
words start with "rs"
ORDINARY REGRESSION: BEST LASSO PREDICTORS
PREDICTOR MARGINAL LEAVE-ONE-OUT
NAME P-VALUE INDEX ESTIMATE
*rs2282755* 0.293290E-05 0.148870E-05 -0.646161
* rs1336838 *0.307521E-05 0.133489E-04 0.463460
* rs2660664 *0.977861E-05 0.531800E-04 0.520049
* rs6870519 *0.122767E-04 0.133453E-04 0.568136
* rs10488345 *0.227205E-04 0.326049E-04 -0.522453
* rs2190208 *0.297239E-04 0.803506E-04 -0.479791
* rs12463130 *0.392298E-04 0.274131E-04 -0.511305
* rs8038015 *0.459242E-04 0.000359 -0.451897
* rs5760687 *0.479103E-04 0.000117 -0.473533
* rs13067678 *0.480441E-04 0.344974E-04 -0.505946
* rs8095161 *0.500883E-04 0.442157E-04 0.505334
* rs4894786 *0.801069E-04 0.000111 -0.468523
* rs7879285 *0.911204E-04 0.000192 -0.386826
* rs5972224 *0.950313E-04 0.148923 0.355116
* rs967785 *0.000194 0.220069 0.179979
ORDINARY REGRESSION: BEST INTERACTION PREDICTORS
MARGINAL LEAVE-ONE-OUT INTERACTION
P-VALUE INDEX ESTIMATE MEMBERS
0.293290E-05 0.117772E-05 -0.645205 *rs2282755*
0.307521E-05 0.000314 0.412997 *rs1336838*
0.484017E-05 0.218311 0.188669 *rs2660664
rs967785*
0.977861E-05 0.070474 0.294653 *rs2660664*
0.122767E-04 0.156325E-04 0.569826 *rs6870519*
0.227205E-04 0.000189 -0.472862 *rs10488345*
0.297239E-04 0.746393E-04 -0.480489 *rs2190208*
0.392298E-04 0.001416 -0.434644 *rs12463130*
0.459242E-04 0.000348 -0.453926 *rs8038015*
0.479103E-04 0.909700E-04 -0.480937 *rs5760687*
0.480441E-04 0.570455E-04 -0.490767 *rs13067678*
0.500883E-04 0.282350E-04 0.516482 *rs8095161*
0.747011E-04 0.164626 0.217575 *rs1336838
rs2660664*
0.801069E-04 0.006909 -0.368615 *rs4894786*
0.911204E-04 0.297226E-05 -0.518989 *rs7879285*
0.950313E-04 0.154268 0.210027 *rs5972224*
0.000139 0.112114 -0.288319 *rs10488345
rs12463130*
0.000194 0.403270 0.280580 *rs967785*
0.001458 0.067065 -0.291453 *rs4894786
rs967785*
0.025459 0.001126 0.496227 *rs2660664
rs7879285
*Thanks,
Sit
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Hi Sit,
# Read the data:
dat <- scan(textConnection("
0.293290E-05 0.117772E-05 -0.645205 *rs2282755*
0.307521E-05 0.000314 0.412997 *rs1336838*
0.484017E-05 0.218311 0.188669 *rs2660664
rs967785*
0.977861E-05 0.070474 0.294653 *rs2660664*
0.122767E-04 0.156325E-04 0.569826 *rs6870519*
0.227205E-04 0.000189 -0.472862 *rs10488345*
0.297239E-04 0.746393E-04 -0.480489 *rs2190208*
0.392298E-04 0.001416 -0.434644 *rs12463130*
0.459242E-04 0.000348 -0.453926 *rs8038015*
0.479103E-04 0.909700E-04 -0.480937 *rs5760687*
0.480441E-04 0.570455E-04 -0.490767 *rs13067678*
0.500883E-04 0.282350E-04 0.516482 *rs8095161*
0.747011E-04 0.164626 0.217575 *rs1336838
rs2660664*
0.801069E-04 0.006909 -0.368615 *rs4894786*
0.911204E-04 0.297226E-05 -0.518989 *rs7879285*
0.950313E-04 0.154268 0.210027 *rs5972224*
0.000139 0.112114 -0.288319 *rs10488345
rs12463130*
0.000194 0.403270 0.280580 *rs967785*
0.001458 0.067065 -0.291453 *rs4894786
rs967785*
0.025459 0.001126 0.496227 *rs2660664
rs7879285"), what="character")
closeAllConnections()
# Get the words starting with "rs"
dat[grep("^rs", dat)]
cheers,
Remko
> Date: Tue, 11 Nov 2008 16:11:22 -0800
> From: sityeekong@gmail.com
> To: r-help@r-project.org
> Subject: [R] scanning text file to extract particular word
>
> Hi all,
>
> I'm wondering if you know a function that allow me to scan through a
whole
> text file, extracting words start with "rs".
>
> For example, below is format of the text file, I would like to extract
those
> words start with "rs"
>
> ORDINARY REGRESSION: BEST LASSO PREDICTORS
>
> PREDICTOR MARGINAL LEAVE-ONE-OUT
> NAME P-VALUE INDEX ESTIMATE
>
> *rs2282755* 0.293290E-05 0.148870E-05 -0.646161
> * rs1336838 *0.307521E-05 0.133489E-04 0.463460
> * rs2660664 *0.977861E-05 0.531800E-04 0.520049
> * rs6870519 *0.122767E-04 0.133453E-04 0.568136
> * rs10488345 *0.227205E-04 0.326049E-04 -0.522453
> * rs2190208 *0.297239E-04 0.803506E-04 -0.479791
> * rs12463130 *0.392298E-04 0.274131E-04 -0.511305
> * rs8038015 *0.459242E-04 0.000359 -0.451897
> * rs5760687 *0.479103E-04 0.000117 -0.473533
> * rs13067678 *0.480441E-04 0.344974E-04 -0.505946
> * rs8095161 *0.500883E-04 0.442157E-04 0.505334
> * rs4894786 *0.801069E-04 0.000111 -0.468523
> * rs7879285 *0.911204E-04 0.000192 -0.386826
> * rs5972224 *0.950313E-04 0.148923 0.355116
> * rs967785 *0.000194 0.220069 0.179979
>
> ORDINARY REGRESSION: BEST INTERACTION PREDICTORS
>
> MARGINAL LEAVE-ONE-OUT INTERACTION
> P-VALUE INDEX ESTIMATE MEMBERS
>
> 0.293290E-05 0.117772E-05 -0.645205 *rs2282755*
> 0.307521E-05 0.000314 0.412997 *rs1336838*
> 0.484017E-05 0.218311 0.188669 *rs2660664
> rs967785*
> 0.977861E-05 0.070474 0.294653 *rs2660664*
> 0.122767E-04 0.156325E-04 0.569826 *rs6870519*
> 0.227205E-04 0.000189 -0.472862 *rs10488345*
> 0.297239E-04 0.746393E-04 -0.480489 *rs2190208*
> 0.392298E-04 0.001416 -0.434644 *rs12463130*
> 0.459242E-04 0.000348 -0.453926 *rs8038015*
> 0.479103E-04 0.909700E-04 -0.480937 *rs5760687*
> 0.480441E-04 0.570455E-04 -0.490767 *rs13067678*
> 0.500883E-04 0.282350E-04 0.516482 *rs8095161*
> 0.747011E-04 0.164626 0.217575 *rs1336838
> rs2660664*
> 0.801069E-04 0.006909 -0.368615 *rs4894786*
> 0.911204E-04 0.297226E-05 -0.518989 *rs7879285*
> 0.950313E-04 0.154268 0.210027 *rs5972224*
> 0.000139 0.112114 -0.288319 *rs10488345
> rs12463130*
> 0.000194 0.403270 0.280580 *rs967785*
> 0.001458 0.067065 -0.291453 *rs4894786
> rs967785*
> 0.025459 0.001126 0.496227 *rs2660664
> rs7879285
>
> *Thanks,
> Sit
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
_________________________________________________________________
l.
ty_112008
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