R help - Oct 2008 - map points from scatterplot3d onto 2d fitted plane

Dear R helpers,

I have a 3D scatter plot that I have generated from scatterplot3d (which
looks great- thanks!) and I can see that the points in my graph fall in a
plane.
Following the example 5 from 3D scatter plot (below) I have fitted a
regression plane.
Now what I would like to do is a rotation  so that my new co-ordinate system
is about the fitted plane (by finding the normal to the plane using
crossprod?) and then map the data points onto this plane.

I played with the function xyz.convert from s3d but i think this is mapping
to the xy plane whereas i would like to map onto my fitted plane.

Is there a package/function that can help me do this that I have missed? or
does anyone have any suggestions / sample code to get me started in the
right direction?
Thanks very much for your help!
Jacqueline

#R-2.6
## example 5
       data(trees)
       s3d <- scatterplot3d(trees, type="h", highlight.3d=TRUE,
           angle=55, scale.y=0.7, pch=16, main="scatterplot3d - 5")
       # Now adding a regression plane to the "scatterplot3d"
       attach(trees)
       my.lm <- lm(Volume ~ Girth + Height)
       s3d$plane3d(my.lm, lty.box = "solid")

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Jacqueline Hall <jacqueline.a.hall <at> googlemail.com> writes:
> I have a 3D scatter plot that I have generated from scatterplot3d (which
> looks great- thanks!) and I can see that the points in my graph fall in a
> 
> Is there a package/function that can help me do this that I have missed? or
> does anyone have any suggestions / sample code to get me started in the
> right direction?
Nothing beats package rgl; there are some example similar to your's coming
with
the package.

Dieter

Jacqueline Hall wrote:
> Dear R helpers,
> 
> I have a 3D scatter plot that I have generated from scatterplot3d (which
> looks great- thanks!) and I can see that the points in my graph fall in a
> plane.
> Following the example 5 from 3D scatter plot (below) I have fitted a
> regression plane.
> Now what I would like to do is a rotation  so that my new co-ordinate
system
> is about the fitted plane (by finding the normal to the plane using
> crossprod?) and then map the data points onto this plane.
> 
> I played with the function xyz.convert from s3d but i think this is mapping
> to the xy plane whereas i would like to map onto my fitted plane.
> 
> Is there a package/function that can help me do this that I have missed? or
> does anyone have any suggestions / sample code to get me started in the
> right direction?

Typing

   vignette(package="scatterplot3d")

shows the package comes with a package vignette. Further on typing

   vignette("s3d", package="scatterplot3d")

shows the vignette which has been published (as a former more compact 
version) as

  Ligges, U. and M?chler, M. (2003). Scatterplot3d - an R Package for 
Visualizing Multivariate Data. Journal of Statistical Software 8(11), 1-20.


See page 22 of the package vignette for an example that could be 
rewritten for the trees data you used below as follows:

   s3d <- scatterplot3d(trees, angle=55, scale.y=0.7, pch=16,
                        main="scatterplot3d - 5")
   my.lm <- lm(Volume ~ Girth + Height, data = trees)
   s3d$plane3d(my.lm, lty.box = "solid")
   orig <- s3d$xyz.convert(trees)
   plane <- s3d$xyz.convert(trees[,1], trees[,2], fitted(my.lm))
   i.negpos <- 1 + (resid(my.lm) > 0)
   segments(orig$x, orig$y, plane$x, plane$y,
            col = c("blue", "red")[i.negpos], lty =
(2:1)[i.negpos])


Best,
Uwe Ligges



> Thanks very much for your help!
> Jacqueline
> 
> #R-2.6
> ## example 5
>        data(trees)
>        s3d <- scatterplot3d(trees, type="h",
highlight.3d=TRUE,
>            angle=55, scale.y=0.7, pch=16, main="scatterplot3d -
5")
>        # Now adding a regression plane to the "scatterplot3d"
>        attach(trees)
>        my.lm <- lm(Volume ~ Girth + Height)
>        s3d$plane3d(my.lm, lty.box = "solid")
> 
> 	[[alternative HTML version deleted]]
> 
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