Bioconductor has its own list, but note that many of us (including the
Bioconductor test farm) are happliy testing all the Bioconductor packages
on 64-bit platforms (including Linux and Solaris -- some at least have
been used on 64-bit Mac OS 10.5).
So please read the posting guide and follow up on the Bioconductor list
with all the details requested.
On Mon, 6 Oct 2008, Octavio Espinosa wrote:
> Hello,
>
> I am attempting to install Bioconductor on 64 bit R. The installation of
some bioconductor packages fails with the errors below. I would be very grateful
for any help on how to resolve the issue.
>
> Best regards,
>
> Octavio Espinosa
>
>
>
> ---------------------
>
>
> Most of the bioconductor packages won't install, for examples
'Biobase'
> errors with:
>
> ** building package indices ...
> Loading required package: methods
> Error in dim(robj) <- c(dX, dY) :
> dims [product 8] do not match the length of object [16]
> Calls: <Anonymous> ... list_files_with_type -> .make_file_exts
-> switch
> -> outer
> Execution halted
> ERROR: installing package indices failed
> ** Removing '/usr/local/lib/R/library/Biobase'
>
> The downloaded packages are in
> /tmp/RtmpHGbpND/downloaded_packages
> Updating HTML index of packages in '.Library'
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, dependencies >
dependencies, :
> installation of package 'Biobase' had non-zero exit status
>
>
> It looks like it doesn't work with 64bit stuff (the byte lengths
> mismatch)
>
> [[alternative HTML version deleted]]
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595