search for: make_file_exts

...nductor packages won't install, for examples 'Biobase' errors with: ** building package indices ... Loading required package: methods Error in dim(robj) <- c(dX, dY) : dims [product 8] do not match the length of object [16] Calls: <Anonymous> ... list_files_with_type -> .make_file_exts -> switch -> outer Execution halted ERROR: installing package indices failed ** Removing '/usr/local/lib/R/library/Biobase' The downloaded packages are in /tmp/RtmpHGbpND/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.pa...

...t is a strict addition so no existing code is likely to be broken. We also need to deprecate data from time to time. Since the field of genomics is moving fast as good example from five years ago is often no longer a good example today. This one is a bit harder, but we can modify tools:::.make_file_exts("data") to first look for a ".DEP" extension (this does not seem to be a widely used extension), and if such a file exists, ie NameofData.DEP one of two things happens: if it contains a character string we use that for the message (we could source it for the message?), i...