Nair, Murlidharan T
2008-Sep-02 14:44 UTC
[R] Error in .local(object, ...) : test vector does not match model !
I am getting a really strange error when I am using predict on an ksvm model.
The error is "Error in .local(object, ...) : test vector does not match
model !". I do understand that this happens when the test vectors do not
match the
Model. But in this case it is not so. I am attaching a portion of both the test
data used for prediction and the data used to build the model. I could find any
difference in the data structure. May be I am missing something can someone
point that. Sorry that the data is slightly large even though there are only
ten points. Is there a reason why my model will work on sequence.data.train and
give the above mentioned error on sequence.data.test. I looked at the
attributes and type and everything seems the same. Any comments are greatly
appreciated.
Thanks ../Murli
#==========================================================================sequence.data.train<-
structure(list(Class = structure(c(2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L), .Label = c("-",
"+"), class = "factor"), V1 = structure(c(2L, 1L, 1L, 1L,
1L,
1L, 1L, 4L, 2L, 4L, 2L, 1L, 2L, 4L, 3L, 4L, 4L, 4L, 3L, 3L), .Label =
c("a",
"c", "g", "t"), class = "factor"), V2 =
structure(c(4L, 3L, 1L,
2L, 4L, 1L, 4L, 3L, 1L, 3L, 4L, 4L, 2L, 4L, 2L, 2L, 4L, 3L, 3L,
1L), .Label = c("a", "c", "g", "t"),
class = "factor"), V3 = structure(c(4L,
4L, 3L, 4L, 3L, 4L, 2L, 2L, 3L, 1L, 4L, 1L, 4L, 4L, 4L, 4L, 1L,
4L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V4 = structure(c(4L, 2L, 1L, 4L, 2L, 4L, 4L, 4L, 1L, 1L,
4L, 1L, 1L, 3L, 3L, 4L, 2L, 4L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V5 = structure(c(2L, 4L,
4L, 2L, 4L, 1L, 3L, 2L, 4L, 1L, 1L, 1L, 2L, 2L, 1L, 4L, 4L,
2L, 1L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V6 = structure(c(4L, 4L, 3L, 1L, 3L, 3L, 3L, 2L, 2L, 3L,
3L, 2L, 2L, 4L, 1L, 3L, 2L, 4L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V7 = structure(c(3L, 1L,
1L, 2L, 4L, 1L, 2L, 4L, 1L, 2L, 2L, 1L, 3L, 2L, 3L, 2L, 2L,
2L, 2L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V8 = structure(c(2L, 1L, 1L, 1L, 2L, 1L, 4L, 1L, 3L, 1L,
1L, 1L, 1L, 4L, 2L, 2L, 4L, 1L, 4L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V9 = structure(c(2L, 2L,
4L, 3L, 1L, 4L, 4L, 1L, 2L, 1L, 1L, 4L, 4L, 2L, 4L, 3L, 4L,
3L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V10 = structure(c(2L, 4L, 2L, 2L, 1L, 4L, 2L, 4L, 2L, 1L,
3L, 4L, 1L, 1L, 3L, 3L, 4L, 3L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V11 = structure(c(4L,
4L, 4L, 4L, 2L, 3L, 1L, 3L, 4L, 4L, 4L, 3L, 4L, 4L, 1L, 2L,
4L, 1L, 1L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V12 = structure(c(1L, 3L, 4L, 3L, 3L, 2L, 3L, 4L, 3L, 3L,
3L, 1L, 2L, 1L, 3L, 2L, 4L, 1L, 3L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V13 = structure(c(2L,
4L, 2L, 2L, 3L, 4L, 1L, 2L, 1L, 2L, 1L, 4L, 4L, 2L, 4L, 4L,
4L, 4L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V14 = structure(c(1L, 3L, 3L, 2L, 3L, 2L, 3L, 1L, 3L, 4L,
1L, 1L, 4L, 1L, 4L, 3L, 1L, 3L, 3L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V15 = structure(c(3L,
3L, 3L, 3L, 3L, 2L, 1L, 1L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 3L,
1L, 1L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V16 = structure(c(1L, 1L, 1L, 4L, 4L, 4L, 1L, 2L, 1L, 4L,
3L, 4L, 4L, 2L, 4L, 4L, 4L, 1L, 1L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V17 = structure(c(4L,
1L, 3L, 3L, 3L, 1L, 3L, 2L, 3L, 3L, 4L, 4L, 4L, 1L, 3L, 3L,
3L, 1L, 3L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V18 = structure(c(2L, 3L, 4L, 2L, 1L, 1L, 3L, 3L, 2L, 4L,
3L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 3L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V19 = structure(c(2L,
2L, 4L, 1L, 1L, 4L, 4L, 1L, 2L, 3L, 1L, 2L, 4L, 1L, 1L, 1L,
2L, 4L, 1L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V20 = structure(c(2L, 4L, 4L, 3L, 1L, 3L, 1L, 3L, 1L, 1L,
4L, 3L, 4L, 1L, 3L, 1L, 3L, 3L, 1L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V21 = structure(c(4L,
3L, 4L, 3L, 2L, 4L, 4L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 3L, 4L,
2L, 1L, 3L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V22 = structure(c(3L, 4L, 2L, 2L, 1L, 2L, 1L, 1L, 4L, 4L,
3L, 2L, 2L, 3L, 2L, 1L, 4L, 1L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V23 = structure(c(2L,
1L, 1L, 2L, 3L, 1L, 4L, 4L, 2L, 1L, 4L, 4L, 4L, 2L, 3L, 2L,
3L, 1L, 2L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V24 = structure(c(2L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 1L, 4L,
4L, 3L, 2L, 1L, 1L, 1L, 1L, 2L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V25 = structure(c(1L,
1L, 3L, 4L, 4L, 2L, 2L, 1L, 1L, 4L, 4L, 1L, 4L, 1L, 1L, 4L,
1L, 1L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V26 = structure(c(3L, 3L, 2L, 3L, 1L, 2L, 2L, 3L, 2L, 1L,
1L, 1L, 2L, 3L, 3L, 3L, 3L, 4L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V27 = structure(c(1L,
4L, 2L, 3L, 1L, 3L, 1L, 2L, 4L, 1L, 1L, 3L, 3L, 3L, 4L, 2L,
1L, 1L, 3L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V28 = structure(c(1L, 4L, 1L, 1L, 1L, 1L, 4L, 4L, 4L, 1L,
2L, 1L, 3L, 4L, 2L, 1L, 1L, 2L, 3L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V29 = structure(c(2L,
4L, 4L, 2L, 3L, 3L, 2L, 1L, 3L, 4L, 1L, 2L, 1L, 2L, 1L, 2L,
1L, 1L, 1L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V30 = structure(c(2L, 4L, 4L, 4L, 1L, 1L, 1L, 1L, 3L, 3L,
1L, 1L, 1L, 1L, 2L, 4L, 3L, 3L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V31 = structure(c(1L,
2L, 2L, 3L, 2L, 1L, 4L, 1L, 2L, 4L, 3L, 1L, 4L, 1L, 2L, 2L,
2L, 4L, 4L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V32 = structure(c(2L, 4L, 1L, 2L, 4L, 4L, 3L, 1L, 4L, 4L,
4L, 4L, 2L, 1L, 1L, 1L, 1L, 2L, 3L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V33 = structure(c(2L,
4L, 1L, 3L, 2L, 3L, 4L, 3L, 2L, 3L, 1L, 3L, 2L, 2L, 1L, 3L,
1L, 1L, 4L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V34 = structure(c(1L, 2L, 3L, 1L, 4L, 1L, 1L, 3L, 1L, 2L,
1L, 3L, 1L, 3L, 3L, 3L, 3L, 3L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V35 = structure(c(2L,
1L, 4L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 3L, 3L, 3L, 4L, 3L,
3L, 1L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V36 = structure(c(4L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L,
3L, 1L, 2L, 2L, 2L, 2L, 2L, 4L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V37 = structure(c(3L,
1L, 1L, 2L, 4L, 4L, 3L, 1L, 4L, 1L, 1L, 1L, 4L, 1L, 2L, 2L,
2L, 2L, 4L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V38 = structure(c(2L, 1L, 3L, 1L, 1L, 1L, 4L, 3L, 2L, 4L,
1L, 1L, 3L, 1L, 2L, 3L, 1L, 4L, 3L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V39 = structure(c(1L,
3L, 4L, 2L, 3L, 1L, 4L, 2L, 3L, 2L, 3L, 3L, 3L, 1L, 4L, 3L,
2L, 2L, 2L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V40 = structure(c(1L, 1L, 2L, 1L, 1L, 1L, 3L, 1L, 4L, 1L,
1L, 1L, 1L, 1L, 3L, 4L, 2L, 1L, 1L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V41 = structure(c(1L,
3L, 2L, 2L, 1L, 1L, 2L, 3L, 3L, 4L, 3L, 1L, 2L, 2L, 2L, 1L,
1L, 3L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V42 = structure(c(2L, 2L, 1L, 1L, 1L, 3L, 4L, 3L, 4L, 4L,
3L, 1L, 4L, 1L, 1L, 3L, 4L, 3L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V43 = structure(c(1L,
1L, 4L, 3L, 1L, 3L, 3L, 4L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L,
2L, 1L, 1L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V44 = structure(c(2L, 3L, 2L, 4L, 1L, 1L, 3L, 3L, 1L, 1L,
1L, 4L, 4L, 4L, 3L, 4L, 1L, 1L, 1L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V45 = structure(c(3L,
4L, 4L, 2L, 1L, 2L, 2L, 2L, 3L, 4L, 2L, 1L, 3L, 4L, 1L, 3L,
1L, 4L, 1L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V46 = structure(c(3L, 3L, 4L, 2L, 2L, 1L, 1L, 4L, 4L, 4L,
4L, 1L, 1L, 4L, 3L, 2L, 1L, 3L, 2L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V47 = structure(c(2L,
3L, 3L, 2L, 1L, 3L, 4L, 1L, 1L, 2L, 4L, 1L, 3L, 1L, 1L, 2L,
3L, 3L, 1L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V48 = structure(c(1L, 1L, 1L, 2L, 1L, 2L, 3L, 2L, 4L, 1L,
1L, 1L, 1L, 1L, 4L, 1L, 1L, 1L, 1L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V49 = structure(c(1L,
1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 3L, 4L,
2L, 1L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V50 = structure(c(3L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 4L,
3L, 4L, 3L, 3L, 1L, 3L, 4L, 3L, 3L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V51 = structure(c(3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V52 = structure(c(3L, 3L, 3L, 3L, 1L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), .Label = c("a",
"c", "t", "g"), class = "factor"),
V53 = structure(c(3L,
1L, 4L, 3L, 1L, 3L, 1L, 1L, 1L, 1L, 1L, 3L, 1L, 1L, 1L, 3L,
1L, 1L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V54 = structure(c(4L, 3L, 4L, 1L, 3L, 2L, 1L, 1L, 2L, 4L,
4L, 1L, 2L, 1L, 4L, 1L, 1L, 1L, 1L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V55 = structure(c(3L,
4L, 4L, 3L, 1L, 4L, 3L, 3L, 2L, 1L, 1L, 3L, 2L, 3L, 3L, 3L,
3L, 1L, 3L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V56 = structure(c(2L, 3L, 4L, 2L, 3L, 1L, 4L, 1L, 2L, 3L,
3L, 1L, 3L, 1L, 4L, 4L, 4L, 2L, 2L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V57 = structure(c(3L,
4L, 1L, 4L, 2L, 2L, 3L, 2L, 4L, 4L, 4L, 1L, 4L, 1L, 2L, 3L,
1L, 4L, 4L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V58 = structure(c(1L, 3L, 4L, 2L, 3L, 2L, 2L, 4L, 2L, 1L,
1L, 4L, 3L, 1L, 4L, 4L, 1L, 4L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V59 = structure(c(3L,
4L, 4L, 3L, 2L, 1L, 4L, 3L, 2L, 1L, 1L, 4L, 4L, 4L, 3L, 3L,
2L, 2L, 3L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V60 = structure(c(2L, 3L, 1L, 2L, 1L, 3L, 4L, 4L, 2L, 4L,
4L, 4L, 3L, 4L, 1L, 2L, 2L, 1L, 4L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V61 = structure(c(4L,
4L, 4L, 1L, 1L, 4L, 4L, 2L, 1L, 2L, 4L, 1L, 1L, 1L, 1L, 2L,
1L, 2L, 4L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V62 = structure(c(3L, 4L, 4L, 2L, 3L, 1L, 1L, 1L, 3L, 1L,
4L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 4L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V63 = structure(c(3L,
4L, 2L, 3L, 1L, 1L, 4L, 4L, 4L, 4L, 3L, 1L, 1L, 1L, 1L, 3L,
3L, 1L, 2L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V64 = structure(c(1L, 4L, 1L, 4L, 2L, 3L, 4L, 2L, 1L, 4L,
4L, 1L, 2L, 1L, 2L, 4L, 2L, 3L, 2L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V65 = structure(c(4L,
3L, 4L, 3L, 1L, 1L, 1L, 1L, 4L, 3L, 1L, 4L, 4L, 3L, 2L, 3L,
3L, 4L, 1L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V66 = structure(c(3L, 1L, 4L, 3L, 2L, 2L, 3L, 4L, 1L, 1L,
4L, 4L, 3L, 2L, 2L, 4L, 2L, 3L, 4L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V67 = structure(c(1L,
1L, 1L, 4L, 4L, 4L, 3L, 3L, 3L, 2L, 1L, 4L, 4L, 4L, 4L, 3L,
1L, 2L, 2L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V68 = structure(c(3L, 3L, 1L, 4L, 3L, 3L, 1L, 4L, 1L, 4L,
1L, 1L, 4L, 4L, 4L, 3L, 1L, 4L, 2L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V69 = structure(c(1L,
1L, 1L, 2L, 2L, 4L, 4L, 3L, 3L, 1L, 1L, 4L, 4L, 3L, 4L, 3L,
3L, 4L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V70 = structure(c(1L, 3L, 2L, 1L, 4L, 2L, 2L, 2L, 1L, 1L,
4L, 4L, 2L, 1L, 2L, 1L, 2L, 4L, 4L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V71 = structure(c(2L,
4L, 1L, 4L, 2L, 1L, 4L, 4L, 2L, 1L, 3L, 4L, 4L, 1L, 3L, 4L,
2L, 3L, 3L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V72 = structure(c(1L, 4L, 1L, 4L, 1L, 4L, 2L, 4L, 1L, 3L,
3L, 2L, 3L, 4L, 2L, 1L, 1L, 2L, 2L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V73 = structure(c(1L,
4L, 2L, 4L, 3L, 2L, 4L, 3L, 1L, 2L, 2L, 1L, 4L, 3L, 4L, 2L,
2L, 4L, 4L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V74 = structure(c(2L, 1L, 2L, 3L, 2L, 1L, 4L, 1L, 4L, 2L,
4L, 2L, 3L, 3L, 2L, 4L, 2L, 4L, 2L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V75 = structure(c(1L,
4L, 4L, 2L, 1L, 4L, 1L, 1L, 4L, 1L, 3L, 1L, 4L, 2L, 4L, 2L,
2L, 4L, 2L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V76 = structure(c(2L, 4L, 4L, 4L, 1L, 3L, 1L, 4L, 4L, 4L,
2L, 4L, 4L, 1L, 4L, 2L, 1L, 3L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V77 = structure(c(2L,
4L, 3L, 4L, 2L, 4L, 1L, 3L, 4L, 4L, 1L, 4L, 1L, 1L, 3L, 1L,
1L, 3L, 2L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V78 = structure(c(2L, 4L, 4L, 3L, 2L, 3L, 4L, 1L, 2L, 4L,
1L, 4L, 2L, 2L, 3L, 1L, 3L, 3L, 4L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V79 = structure(c(2L,
4L, 4L, 4L, 4L, 2L, 4L, 3L, 4L, 3L, 4L, 3L, 3L, 1L, 4L, 3L,
3L, 3L, 4L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V80 = structure(c(2L, 2L, 4L, 3L, 1L, 4L, 1L, 3L, 4L, 4L,
1L, 4L, 2L, 4L, 3L, 4L, 2L, 4L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V81 = structure(c(1L,
2L, 1L, 4L, 3L, 4L, 4L, 3L, 2L, 2L, 4L, 4L, 4L, 1L, 3L, 1L,
4L, 2L, 2L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V82 = structure(c(4L, 4L, 2L, 2L, 1L, 3L, 4L, 3L, 1L, 4L,
4L, 1L, 3L, 1L, 3L, 4L, 2L, 2L, 2L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V83 = structure(c(3L,
2L, 4L, 1L, 1L, 1L, 4L, 1L, 1L, 3L, 4L, 4L, 3L, 1L, 4L, 3L,
4L, 4L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V84 = structure(c(4L, 4L, 4L, 2L, 3L, 1L, 2L, 4L, 3L, 4L,
4L, 1L, 2L, 1L, 3L, 2L, 3L, 4L, 1L, 4L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V85 = structure(c(3L,
1L, 1L, 2L, 1L, 4L, 2L, 1L, 3L, 3L, 1L, 4L, 4L, 3L, 3L, 1L,
4L, 1L, 1L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V86 = structure(c(2L, 2L, 3L, 4L, 1L, 3L, 4L, 3L, 3L, 4L,
2L, 1L, 4L, 4L, 1L, 4L, 2L, 2L, 4L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V87 = structure(c(3L,
4L, 4L, 3L, 3L, 1L, 4L, 2L, 2L, 4L, 1L, 1L, 1L, 4L, 4L, 4L,
1L, 4L, 4L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V88 = structure(c(4L, 4L, 3L, 2L, 2L, 3L, 3L, 1L, 1L, 4L,
3L, 4L, 4L, 4L, 3L, 3L, 1L, 4L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V89 = structure(c(3L,
3L, 2L, 2L, 2L, 3L, 1L, 3L, 2L, 4L, 1L, 4L, 2L, 4L, 3L, 2L,
3L, 4L, 1L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V90 = structure(c(4L, 3L, 1L, 1L, 1L, 3L, 1L, 2L, 1L, 2L,
1L, 4L, 4L, 1L, 3L, 4L, 3L, 2L, 4L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V91 = structure(c(3L,
4L, 3L, 4L, 1L, 3L, 4L, 4L, 4L, 4L, 2L, 1L, 1L, 1L, 3L, 4L,
4L, 1L, 4L, 4L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V92 = structure(c(2L, 4L, 2L, 4L, 3L, 1L, 2L, 4L, 3L, 4L,
4L, 4L, 4L, 2L, 4L, 3L, 4L, 1L, 4L, 1L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V93 = structure(c(2L,
4L, 2L, 2L, 1L, 4L, 4L, 4L, 4L, 2L, 3L, 3L, 3L, 1L, 3L, 4L,
3L, 2L, 2L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V94 = structure(c(1L, 4L, 4L, 4L, 1L, 1L, 1L, 3L, 2L, 4L,
1L, 4L, 2L, 1L, 3L, 2L, 4L, 4L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V95 = structure(c(3L,
2L, 1L, 2L, 3L, 3L, 2L, 2L, 4L, 4L, 1L, 1L, 2L, 4L, 3L, 1L,
2L, 4L, 3L, 2L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V96 = structure(c(3L, 1L, 1L, 1L, 1L, 2L, 4L, 2L, 3L, 3L,
1L, 1L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V97 = structure(c(1L,
4L, 4L, 3L, 1L, 1L, 4L, 4L, 3L, 4L, 4L, 2L, 1L, 2L, 2L, 2L,
4L, 1L, 1L, 1L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V98 = structure(c(2L, 4L, 4L, 3L, 3L, 3L, 3L, 2L, 1L, 3L,
4L, 1L, 3L, 2L, 1L, 4L, 4L, 3L, 2L, 3L), .Label = c("a",
"c", "g", "t"), class = "factor"),
V99 = structure(c(2L,
4L, 3L, 4L, 1L, 2L, 2L, 1L, 3L, 3L, 4L, 3L, 1L, 4L, 3L, 3L,
3L, 1L, 1L, 3L), .Label = c("a", "c", "g",
"t"), class = "factor"),
V100 = structure(c(2L, 2L, 1L, 3L, 1L, 4L, 2L, 3L, 2L, 4L,
1L, 4L, 3L, 1L, 3L, 4L, 3L, 3L, 1L, 2L), .Label = c("a",
"c", "g", "t"), class = "factor")),
.Names = c("Class", "V1",
"V2", "V3", "V4", "V5", "V6",
"V7", "V8", "V9", "V10",
"V11",
"V12", "V13", "V14", "V15",
"V16", "V17", "V18", "V19",
"V20",
"V21", "V22", "V23", "V24",
"V25", "V26", "V27", "V28",
"V29",
"V30", "V31", "V32", "V33",
"V34", "V35", "V36", "V37",
"V38",
"V39", "V40", "V41", "V42",
"V43", "V44", "V45", "V46",
"V47",
"V48", "V49", "V50", "V51",
"V52", "V53", "V54", "V55",
"V56",
"V57", "V58", "V59", "V60",
"V61", "V62", "V63", "V64",
"V65",
"V66", "V67", "V68", "V69",
"V70", "V71", "V72", "V73",
"V74",
"V75", "V76", "V77", "V78",
"V79", "V80", "V81", "V82",
"V83",
"V84", "V85", "V86", "V87",
"V88", "V89", "V90", "V91",
"V92",
"V93", "V94", "V95", "V96",
"V97", "V98", "V99", "V100"), row.names
= c(105L,
99L, 26L, 27L, 13L, 109L, 111L, 110L, 164L, 103L, 2008L, 158L,
1089L, 2336L, 553L, 600L, 2134L, 2465L, 979L, 2394L), class =
"data.frame")
#==================================================Sequence.data.test<-structure(list(Class
= structure(c(2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L), .Names = c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("-", "+"), class = "factor"), V1 =
structure(c(2L,
1L, 1L, 1L, 1L, 1L, 1L, 4L, 2L, 4L, 2L, 1L, 2L, 4L, 3L, 4L, 4L,
4L, 3L, 3L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V2 = structure(c(4L, 3L, 1L, 2L,
4L,
1L, 4L, 3L, 1L, 3L, 4L, 4L, 2L, 4L, 2L, 2L, 4L, 3L, 3L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V3 = structure(c(4L,
4L, 3L, 4L, 3L, 4L, 2L, 2L, 3L, 1L, 4L, 1L, 4L, 4L, 4L, 4L, 1L,
4L, 1L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V4 = structure(c(4L, 2L, 1L, 4L,
2L,
4L, 4L, 4L, 1L, 1L, 4L, 1L, 1L, 3L, 3L, 4L, 2L, 4L, 2L, 3L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V5 = structure(c(2L,
4L, 4L, 2L, 4L, 1L, 3L, 2L, 4L, 1L, 1L, 1L, 2L, 2L, 1L, 4L, 4L,
2L, 1L, 2L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V6 = structure(c(4L, 4L, 3L, 1L,
3L,
3L, 3L, 2L, 2L, 3L, 3L, 2L, 2L, 4L, 1L, 3L, 2L, 4L, 4L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V7 = structure(c(3L,
1L, 1L, 2L, 4L, 1L, 2L, 4L, 1L, 2L, 2L, 1L, 3L, 2L, 3L, 2L, 2L,
2L, 2L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V8 = structure(c(2L, 1L, 1L, 1L,
2L,
1L, 4L, 1L, 3L, 1L, 1L, 1L, 1L, 4L, 2L, 2L, 4L, 1L, 4L, 2L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V9 = structure(c(2L,
2L, 4L, 3L, 1L, 4L, 4L, 1L, 2L, 1L, 1L, 4L, 4L, 2L, 4L, 3L, 4L,
3L, 3L, 1L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V10 = structure(c(2L, 4L, 2L, 2L,
1L,
4L, 2L, 4L, 2L, 1L, 3L, 4L, 1L, 1L, 3L, 3L, 4L, 3L, 1L, 2L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V11 = structure(c(4L,
4L, 4L, 4L, 2L, 3L, 1L, 3L, 4L, 4L, 4L, 3L, 4L, 4L, 1L, 2L, 4L,
1L, 1L, 2L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V12 = structure(c(1L, 3L, 4L, 3L,
3L,
2L, 3L, 4L, 3L, 3L, 3L, 1L, 2L, 1L, 3L, 2L, 4L, 1L, 3L, 2L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V13 = structure(c(2L,
4L, 2L, 2L, 3L, 4L, 1L, 2L, 1L, 2L, 1L, 4L, 4L, 2L, 4L, 4L, 4L,
4L, 1L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V14 = structure(c(1L, 3L, 3L, 2L,
3L,
2L, 3L, 1L, 3L, 4L, 1L, 1L, 4L, 1L, 4L, 3L, 1L, 3L, 3L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V15 = structure(c(3L,
3L, 3L, 3L, 3L, 2L, 1L, 1L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 3L, 1L,
1L, 1L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V16 = structure(c(1L, 1L, 1L, 4L,
4L,
4L, 1L, 2L, 1L, 4L, 3L, 4L, 4L, 2L, 4L, 4L, 4L, 1L, 1L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V17 = structure(c(4L,
1L, 3L, 3L, 3L, 1L, 3L, 2L, 3L, 3L, 4L, 4L, 4L, 1L, 3L, 3L, 3L,
1L, 3L, 2L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V18 = structure(c(2L, 3L, 4L, 2L,
1L,
1L, 3L, 3L, 2L, 4L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 3L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V19 = structure(c(2L,
2L, 4L, 1L, 1L, 4L, 4L, 1L, 2L, 3L, 1L, 2L, 4L, 1L, 1L, 1L, 2L,
4L, 1L, 3L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V20 = structure(c(2L, 4L, 4L, 3L,
1L,
3L, 1L, 3L, 1L, 1L, 4L, 3L, 4L, 1L, 3L, 1L, 3L, 3L, 1L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V21 = structure(c(4L,
3L, 4L, 3L, 2L, 4L, 4L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 3L, 4L, 2L,
1L, 3L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V22 = structure(c(3L, 4L, 2L, 2L,
1L,
2L, 1L, 1L, 4L, 4L, 3L, 2L, 2L, 3L, 2L, 1L, 4L, 1L, 2L, 3L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V23 = structure(c(2L,
1L, 1L, 2L, 3L, 1L, 4L, 4L, 2L, 1L, 4L, 4L, 4L, 2L, 3L, 2L, 3L,
1L, 2L, 1L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V24 = structure(c(2L, 1L, 1L, 1L,
1L,
1L, 1L, 3L, 1L, 4L, 4L, 3L, 2L, 1L, 1L, 1L, 1L, 2L, 4L, 1L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V25 = structure(c(1L,
1L, 3L, 4L, 4L, 2L, 2L, 1L, 1L, 4L, 4L, 1L, 4L, 1L, 1L, 4L, 1L,
1L, 3L, 1L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V26 = structure(c(3L, 3L, 2L, 3L,
1L,
2L, 2L, 3L, 2L, 1L, 1L, 1L, 2L, 3L, 3L, 3L, 3L, 4L, 1L, 2L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V27 = structure(c(1L,
4L, 2L, 3L, 1L, 3L, 1L, 2L, 4L, 1L, 1L, 3L, 3L, 3L, 4L, 2L, 1L,
1L, 3L, 2L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V28 = structure(c(1L, 4L, 1L, 1L,
1L,
1L, 4L, 4L, 4L, 1L, 2L, 1L, 3L, 4L, 2L, 1L, 1L, 2L, 3L, 4L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V29 = structure(c(2L,
4L, 4L, 2L, 3L, 3L, 2L, 1L, 3L, 4L, 1L, 2L, 1L, 2L, 1L, 2L, 1L,
1L, 1L, 3L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V30 = structure(c(2L, 4L, 4L, 4L,
1L,
1L, 1L, 1L, 3L, 3L, 1L, 1L, 1L, 1L, 2L, 4L, 3L, 3L, 1L, 2L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
= "factor"), V31 = structure(c(1L,
2L, 2L, 3L, 2L, 1L, 4L, 1L, 2L, 4L, 3L, 1L, 4L, 1L, 2L, 2L, 2L,
4L, 4L, 4L), .Names = c("105", "99", "26",
"27", "13", "109",
"111", "110", "164", "103",
"2008", "158", "1089", "2336",
"553",
"600", "2134", "2465", "979",
"2394"), .Label = c("a", "c", "g",
"t"), class = "factor"), V32 = structure(c(2L, 4L, 1L, 2L,
4L,
4L, 3L, 1L, 4L, 4L, 4L, 4L, 2L, 1L, 1L, 1L, 1L, 2L, 3L, 3L), .Names =
c("105",
"99", "26", "27", "13", "109",
"111", "110", "164", "103",
"2008",
"158", "1089", "2336", "553",
"600", "2134", "2465", "979",
"2394"
), .Label = c("a", "c", "g", "t"), class
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Wisdom of the Ancients
