Hallo, how can I store a variable as a tab-delimited txt-file? I crated a variable with the following commands:> fit12<-lmFit(qrg[,1:2]) > t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1]) > t12ID logFC t P.Value adj.P.Val B 522 PLAU_OP -6.836144 -8.420414 5.589416e-05 0.01212520 2.054965 1555 CD44_WIZ -6.569622 -8.227938 6.510169e-05 0.01212520 1.944046 767 CD44_WIZ -8.164317 -8.201678 6.648556e-05 0.01212520 1.928622 1234 EMP1_WIZ -6.822609 -8.145985 6.953146e-05 0.01212520 1.895674 445 EMP1_WIZ -6.796011 -8.079979 7.334676e-05 0.01212520 1.856207 1310 PLAU_OP -6.361645 -7.955721 8.118607e-05 0.01212520 1.780656 1460 FOSL1_WIZ -6.265342 -7.841959 8.919795e-05 0.01212520 1.710025 1459 FOSL1_WIZ -6.132684 -7.692912 1.010747e-04 0.01212520 1.615319 1326 RAC2_WIZ -6.130817 -7.648676 1.049345e-04 0.01212520 1.586728 768 CD44_WIZ -6.054628 -7.592040 1.101204e-04 0.01212520 1.549795 537 RAC2_WIZ -6.447683 -7.577670 1.114816e-04 0.01212520 1.540365 1418 FOSL1_OP -6.022508 -7.556906 1.134820e-04 0.01212520 1.526697 1210 EMP1_OP -5.997289 -7.502210 1.189472e-04 0.01212520 1.490452 672 FOSL1_WIZ -6.060602 -7.491438 1.200581e-04 0.01212520 1.483272 446 EMP1_WIZ -6.211220 -7.461834 1.231715e-04 0.01212520 1.463470 545 PLAU_WIZ -5.931195 -7.429649 1.266597e-04 0.01212520 1.441824 630 FOSL1_OP -5.877253 -7.368262 1.336248e-04 0.01212520 1.400193 671 FOSL1_WIZ -5.870755 -7.325227 1.387642e-04 0.01212520 1.370736 1417 FOSL1_OP -5.813254 -7.294160 1.426123e-04 0.01212520 1.349331 422 EMP1_OP -6.013347 -7.286186 1.436191e-04 0.01212520 1.343819 546 PLAU_WIZ -6.030866 -7.282026 1.441477e-04 0.01212520 1.340939 369 PLAUR_OP -6.054368 -7.209710 1.536923e-04 0.01212520 1.290546 538 RAC2_WIZ -5.959863 -7.147772 1.624334e-04 0.01212520 1.246868 1325 RAC2_WIZ -5.811128 -7.144946 1.628454e-04 0.01212520 1.244864 1309 PLAU_OP -6.028117 -7.075208 1.733917e-04 0.01239404 1.195081>Now I want to store t12 as a tab-delimited txt-file to use it in other programm. How can I realize this? Thanks, Corinna
See ?write.table On 24/01/2008, Schmitt, Corinna <Corinna.Schmitt at igb.fraunhofer.de> wrote:> Hallo, > how can I store a variable as a tab-delimited txt-file? I crated a > variable with the following commands: > > > fit12<-lmFit(qrg[,1:2]) > > t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1]) > > t12 > ID logFC t P.Value adj.P.Val B > 522 PLAU_OP -6.836144 -8.420414 5.589416e-05 0.01212520 2.054965 > 1555 CD44_WIZ -6.569622 -8.227938 6.510169e-05 0.01212520 1.944046 > 767 CD44_WIZ -8.164317 -8.201678 6.648556e-05 0.01212520 1.928622 > 1234 EMP1_WIZ -6.822609 -8.145985 6.953146e-05 0.01212520 1.895674 > 445 EMP1_WIZ -6.796011 -8.079979 7.334676e-05 0.01212520 1.856207 > 1310 PLAU_OP -6.361645 -7.955721 8.118607e-05 0.01212520 1.780656 > 1460 FOSL1_WIZ -6.265342 -7.841959 8.919795e-05 0.01212520 1.710025 > 1459 FOSL1_WIZ -6.132684 -7.692912 1.010747e-04 0.01212520 1.615319 > 1326 RAC2_WIZ -6.130817 -7.648676 1.049345e-04 0.01212520 1.586728 > 768 CD44_WIZ -6.054628 -7.592040 1.101204e-04 0.01212520 1.549795 > 537 RAC2_WIZ -6.447683 -7.577670 1.114816e-04 0.01212520 1.540365 > 1418 FOSL1_OP -6.022508 -7.556906 1.134820e-04 0.01212520 1.526697 > 1210 EMP1_OP -5.997289 -7.502210 1.189472e-04 0.01212520 1.490452 > 672 FOSL1_WIZ -6.060602 -7.491438 1.200581e-04 0.01212520 1.483272 > 446 EMP1_WIZ -6.211220 -7.461834 1.231715e-04 0.01212520 1.463470 > 545 PLAU_WIZ -5.931195 -7.429649 1.266597e-04 0.01212520 1.441824 > 630 FOSL1_OP -5.877253 -7.368262 1.336248e-04 0.01212520 1.400193 > 671 FOSL1_WIZ -5.870755 -7.325227 1.387642e-04 0.01212520 1.370736 > 1417 FOSL1_OP -5.813254 -7.294160 1.426123e-04 0.01212520 1.349331 > 422 EMP1_OP -6.013347 -7.286186 1.436191e-04 0.01212520 1.343819 > 546 PLAU_WIZ -6.030866 -7.282026 1.441477e-04 0.01212520 1.340939 > 369 PLAUR_OP -6.054368 -7.209710 1.536923e-04 0.01212520 1.290546 > 538 RAC2_WIZ -5.959863 -7.147772 1.624334e-04 0.01212520 1.246868 > 1325 RAC2_WIZ -5.811128 -7.144946 1.628454e-04 0.01212520 1.244864 > 1309 PLAU_OP -6.028117 -7.075208 1.733917e-04 0.01239404 1.195081 > > > > Now I want to store t12 as a tab-delimited txt-file to use it in other > programm. How can I realize this? > > Thanks, Corinna > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Henrique Dallazuanna Curitiba-Paran?-Brasil 25? 25' 40" S 49? 16' 22" O
Hi,> Now I want to store t12 as a tab-delimited txt-file to use it in other > programm. How can I realize this?Did you take a look at the write.table() function ? You can supply ?\t? as ?sep? argument to get a tab-delimited file. Hope that helps, Julien -- Julien Barnier Groupe de recherche sur la socialisation ENS-LSH - Lyon, France
Hallo Julien, thanks for the hint. It works now. Corinna -----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] On Behalf Of Julien Barnier Sent: Thursday, January 24, 2008 11:08 AM To: r-help at stat.math.ethz.ch Subject: Re: [R] store variable as tab-del. txt-file Hi,> Now I want to store t12 as a tab-delimited txt-file to use it in other > programm. How can I realize this?Did you take a look at the write.table() function ? You can supply <\t> as <sep> argument to get a tab-delimited file. Hope that helps, Julien -- Julien Barnier Groupe de recherche sur la socialisation ENS-LSH - Lyon, France ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.