Fán Lóng
2007-Nov-01 11:08 UTC
[R] Problem with compiling 64bit R(2.5.1) under HP-UX(ia64)
Hi there,
We are trying to compile a 64bit version of R (2.5.1) on HP-UX
(B.11.23 U ia64), but are running into some problems.
This is our configure step:
../configure --prefix=/rnd/homes/lfan/R251 --enable-R-shlib CC="cc"
CFLAGS="+z +DD64" CXX="aCC" CXXFLAGS="-b -lxnet +z
+DD64" FC="f90"
FCFLAGS="+DD64" F77="f90" FFLAGS="+DD64"
LDFLAGS="-L/usr/lib/hpux64
-L/opt/fortran90/lib" LIBnn=lib --with-x=no --with-readline=no
--with-iconv=no --without-jpeglib --without-libpng
--without-system-bzlib --without-tcltk --without-system-pcre
--without-system-zlib
This steps seems to end ok:
R is now configured for ia64-hp-hpux11.23
Source directory: ..
Installation directory: /rnd/homes/lfan/R251
C compiler: cc +z +DD64
Fortran 77 compiler: f90 +DD64
C++ compiler: aCC -b -lxnet +z +DD64
Fortran 90/95 compiler: f90 +DD64
Obj-C compiler: cc
Interfaces supported:
External libraries:
Additional capabilities: NLS
Options enabled: shared R library, shared BLAS, R profiling, Java
Recommended packages: yes
configure: WARNING: I could not determine CXXPICFLAGS.
configure: WARNING: I could not determine SHLIB_CXXLDFLAGS
configure: WARNING: I could not determine CXXPICFLAGS.
configure: WARNING: you cannot build DVI versions of the R manuals
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: I could not determine a PDF viewer
When trying to compile(gmake), I get this:
"../../../src/main/regex.c", line 9646: error #2020: identifier
"bool" is
undefined
bool dests_node_malloced = false;
^
"../../../src/main/regex.c", line 9646: error #2020: identifier
"false" is
undefined
bool dests_node_malloced = false;
^
"../../../src/main/regex.c", line 9647: error #2020: identifier
"bool" is
undefined
bool dest_states_malloced = false;
^
"../../../src/main/regex.c", line 9672: error #2020: identifier
"true" is
undefined
dests_node_malloced = true;
^
"../../../src/main/regex.c", line 9721: error #2020: identifier
"true" is
undefined
dest_states_malloced = true;
^
"../../../src/main/regex.c", line 9926: error #2020: identifier
"bool" is
undefined
bool accepts_newline = bitset_contain (accepts, NEWLINE_CHAR);
^
"../../../src/main/regex.c", line 813: warning #2177-D: function
"bitset_mask"
was declared but never referenced
bitset_mask (bitset_t dest, const bitset_t src)
^
6 errors detected in the compilation of "../../../src/main/regex.c".
gmake[3]: *** [regex.o] Error 2
gmake[3]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src/main'
gmake[2]: *** [R] Error 2
gmake[2]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src/main'
gmake[1]: *** [R] Error 1
gmake[1]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src'
gmake: *** [R] Error 1
After looking up the R Installation and Administration document and
seeking help from Google, I still can't get answer why even "bool"
in
a c file can not be recognized.
Using the f90 and cc for Fortran and C because we only have this
installed. Is this the problem?
Below envrionment variables may associated:
SHLIB_PATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib:.:/usr/lib:/lib
LD_LIBRARY_PATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib
LIBPATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib
Best Regards
Foylong
Prof Brian Ripley
2007-Nov-01 16:44 UTC
[R] Problem with compiling 64bit R(2.5.1) under HP-UX(ia64)
Note that R 2.5.1 is obsolete, so please do as the posting guide asks and use the current version. At least in 2.6.0, regex.c contains #if defined HAVE_STDBOOL_H || defined _LIBC # include <stdbool.h> #else # define bool Rboolean # define true TRUE # define false FALSE #endif I surmise from this that your OS has the C99 header stdbool.h but that it is broken. Try unsetting HAVE_STDBOOL_H in src/include/config.h and re-gmake-ing. On Thu, 1 Nov 2007, F?n L?ng wrote:> Hi there, > We are trying to compile a 64bit version of R (2.5.1) on HP-UX > (B.11.23 U ia64), but are running into some problems. > > > This is our configure step: > > ../configure --prefix=/rnd/homes/lfan/R251 --enable-R-shlib CC="cc" > CFLAGS="+z +DD64" CXX="aCC" CXXFLAGS="-b -lxnet +z +DD64" FC="f90" > FCFLAGS="+DD64" F77="f90" FFLAGS="+DD64" LDFLAGS="-L/usr/lib/hpux64 > -L/opt/fortran90/lib" LIBnn=lib --with-x=no --with-readline=no > --with-iconv=no --without-jpeglib --without-libpng > --without-system-bzlib --without-tcltk --without-system-pcre > --without-system-zlib > > > This steps seems to end ok: > > R is now configured for ia64-hp-hpux11.23 > > Source directory: .. > Installation directory: /rnd/homes/lfan/R251 > > C compiler: cc +z +DD64 > Fortran 77 compiler: f90 +DD64 > > C++ compiler: aCC -b -lxnet +z +DD64 > Fortran 90/95 compiler: f90 +DD64 > Obj-C compiler: cc > > Interfaces supported: > External libraries: > Additional capabilities: NLS > Options enabled: shared R library, shared BLAS, R profiling, Java > > Recommended packages: yes > > configure: WARNING: I could not determine CXXPICFLAGS. > configure: WARNING: I could not determine SHLIB_CXXLDFLAGS > configure: WARNING: I could not determine CXXPICFLAGS. > configure: WARNING: you cannot build DVI versions of the R manuals > configure: WARNING: you cannot build info or HTML versions of the R manuals > configure: WARNING: you cannot build PDF versions of the R manuals > configure: WARNING: I could not determine a PDF viewer > > > > When trying to compile(gmake), I get this: > > > "../../../src/main/regex.c", line 9646: error #2020: identifier "bool" is > undefined > bool dests_node_malloced = false; > ^ > > "../../../src/main/regex.c", line 9646: error #2020: identifier "false" is > undefined > bool dests_node_malloced = false; > ^ > > "../../../src/main/regex.c", line 9647: error #2020: identifier "bool" is > undefined > bool dest_states_malloced = false; > ^ > > "../../../src/main/regex.c", line 9672: error #2020: identifier "true" is > undefined > dests_node_malloced = true; > ^ > > "../../../src/main/regex.c", line 9721: error #2020: identifier "true" is > undefined > dest_states_malloced = true; > ^ > > "../../../src/main/regex.c", line 9926: error #2020: identifier "bool" is > undefined > bool accepts_newline = bitset_contain (accepts, NEWLINE_CHAR); > ^ > > "../../../src/main/regex.c", line 813: warning #2177-D: function "bitset_mask" > was declared but never referenced > bitset_mask (bitset_t dest, const bitset_t src) > ^ > > 6 errors detected in the compilation of "../../../src/main/regex.c". > gmake[3]: *** [regex.o] Error 2 > gmake[3]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src/main' > gmake[2]: *** [R] Error 2 > gmake[2]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src/main' > gmake[1]: *** [R] Error 1 > gmake[1]: Leaving directory `/rnd/homes/lfan/R-2.5.1/build/src' > gmake: *** [R] Error 1 > > After looking up the R Installation and Administration document and > seeking help from Google, I still can't get answer why even "bool" in > a c file can not be recognized. > > Using the f90 and cc for Fortran and C because we only have this > installed. Is this the problem? > > > Below envrionment variables may associated: > > SHLIB_PATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib:.:/usr/lib:/lib > LD_LIBRARY_PATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib > LIBPATH=/usr/lib/hpux64:.:/lib/hpux64:.:/rnd/homes/lfan/R251/lib/R/lib:.:/opt/fortran90/lib > > > > Best Regards > > > Foylong > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595